Protein

View in Explore
Genbank accession
YP_011992184.1 [GenBank]
Protein name
central straight fiber
RBP type
TSP
Evidence RBPdetect
Probability 0,84
Protein sequence
MISNNAPAKMVLNSIMTGYTMAYIQHSIYTDYDVIGRSFWLKIGEDIDRRDYTGVDTFFVMINNLTPSSIYQVQGAFYDSIIDEELLEAKIGINLSNETNFKTKERPVIVAARSESEPVDVGVGAPIVVVETTGEASYCTIELRSTASEDSEWVKYYIGAMGATIKFGGVPIGDYKIRISGQVTMPDGVTVDSSGYYELPSILTVAYNFIPPTAPTNITFKAARIADGKERYDVRIEWDWQKGGGSNVREFLVTYIDSAEFARTGWAKAQKINVGAAQAATIVSFPWKVDHTFKVASIAWGPDKQDITESAPVTFILNEDTPLDNSFVNETGIEVNYAYIKGKLNDNGTWRQTFLIDAATGAINIGLLDEEGKAPISFDPINHVVNVDGKVITRDINAANFIMTNLSGKDNPAIYTQGKSWGDNNSGIWMGMDNASAKAKLDIGNATQWIRYDGDVLRISSGVVIGTPNGDVDIGTGLQGKQTVFVYKLATSLPAKPLEQDYPPPGWSKTPPNRTDMTQNIYATTGTLDPVTNKLLAGTSWSDVVQWSGTEGTIGHDGQRGPGMYSLGIAGLSGWNDAQANAFFQNNFGGPPVKYDVLTEFNSSAPQTAFTRQWNGSSWVSPAMVLHGDMIVNGTVTASKIVANNAFLSQIGVNIIYDRNAALSGNPEAYYKMKIDLNSGYIHIR
Physico‐chemical
properties
protein length:685 AA
molecular weight: 74666,92800 Da
isoelectric point:4,84594
aromaticity:0,10219
hydropathy:-0,20336

Domains

Domains [InterPro]
IPR057550
STR
10–97
IPR057550 IPR057551 IPR057552 IPR057549
IPR057551
STR
103–197
IPR057551
YP_011992184.1
1 685
Architecture
STR
STR
STR
STR
STR 10-97 | STR 103-197 | STR 211-335 | STR 350-664 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_011992184.1
1 685
Domain Start End Length (AA) Confidence
N-terminal 1 408 408 0,9252
Central domain 409 649 242 0,1323
C-terminal 650 685 35 0,9063
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-408
Central
409-649
C-terminal
650-685

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage TrudiGerster
[NCBI] 		2851991 Uroviricota > Caudoviricetes > Demerecviridae > Epseptimavirus > Epseptimavirus trudigerster
Host Escherichia coli K-12
[NCBI] 		83333 Bacteria > Proteobacteria > Gammaproteobacteria > Enterobacteriales > Enterobacteriaceae > Escherichia

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_011992184.1 [NCBI]
Genbank nucleotide accession
NC_105114 [NCBI]
CDS location
range 18401 -> 20458
strand +
CDS
ATGATTTCGAATAATGCACCAGCCAAGATGGTCTTAAATAGTATTATGACTGGATATACAATGGCGTATATCCAGCATTCTATCTATACCGACTACGATGTTATCGGTAGATCATTCTGGCTAAAGATTGGGGAAGATATTGACAGACGTGACTATACCGGTGTCGATACTTTCTTTGTTATGATTAATAACTTAACTCCCTCTTCCATTTATCAGGTTCAGGGAGCTTTCTATGACTCGATTATAGATGAAGAACTTCTTGAAGCGAAGATTGGTATTAACCTCTCTAATGAAACTAATTTTAAAACAAAAGAGAGGCCAGTCATTGTTGCTGCAAGATCAGAATCAGAACCTGTTGACGTGGGTGTTGGTGCTCCAATAGTTGTTGTAGAAACTACTGGTGAAGCTAGTTACTGCACTATTGAGTTAAGAAGCACTGCATCAGAAGATAGTGAATGGGTTAAGTATTACATAGGTGCAATGGGGGCTACTATTAAGTTTGGTGGTGTTCCTATTGGTGACTATAAGATTAGAATATCTGGCCAAGTAACTATGCCAGACGGTGTTACAGTAGACTCTTCAGGATACTATGAACTCCCTAGTATTCTTACTGTTGCATATAATTTCATTCCACCTACTGCTCCAACTAACATTACTTTCAAAGCTGCTAGAATTGCAGATGGTAAAGAACGTTATGATGTTAGGATTGAGTGGGATTGGCAAAAGGGTGGTGGTTCTAACGTTCGTGAGTTTCTAGTTACTTATATAGATTCTGCGGAATTTGCTAGAACTGGATGGGCTAAAGCTCAGAAAATAAACGTAGGTGCTGCGCAGGCTGCAACAATTGTTTCCTTCCCATGGAAAGTTGATCATACCTTCAAGGTAGCATCAATTGCCTGGGGTCCTGATAAACAAGACATTACAGAATCTGCTCCTGTAACGTTTATACTAAATGAAGATACTCCACTCGATAACAGCTTTGTTAATGAGACTGGTATCGAAGTTAACTATGCATACATTAAAGGTAAACTTAATGACAATGGTACGTGGAGACAGACTTTCTTAATTGATGCCGCAACTGGTGCTATTAACATTGGCCTATTAGATGAAGAGGGTAAAGCTCCAATTTCCTTTGACCCAATAAATCACGTTGTTAACGTTGATGGTAAAGTAATTACTAGAGATATTAATGCTGCAAACTTTATTATGACTAACCTGTCTGGTAAAGATAACCCTGCAATTTACACTCAAGGTAAATCTTGGGGAGATAATAACTCTGGTATCTGGATGGGGATGGATAATGCCTCGGCCAAAGCAAAATTAGATATTGGTAACGCCACACAATGGATTCGTTATGACGGTGATGTACTGCGTATCTCTAGTGGAGTAGTTATTGGAACCCCTAATGGTGACGTTGACATTGGGACAGGTCTGCAAGGTAAGCAAACAGTATTTGTTTATAAGTTAGCAACCTCACTTCCAGCAAAACCATTAGAGCAAGATTACCCACCTCCCGGTTGGTCGAAAACTCCACCTAACCGTACAGATATGACTCAAAATATCTATGCGACTACAGGTACACTTGATCCAGTTACTAATAAACTGCTTGCAGGTACTAGCTGGTCAGACGTGGTTCAATGGAGTGGTACTGAAGGTACCATCGGTCATGATGGTCAGCGTGGTCCTGGGATGTATTCCTTAGGAATTGCTGGATTGAGTGGGTGGAATGATGCTCAGGCTAACGCTTTCTTCCAAAATAACTTTGGAGGTCCTCCAGTTAAGTATGATGTATTGACTGAGTTTAATAGTAGTGCTCCACAAACTGCATTTACTCGTCAATGGAATGGCTCTAGTTGGGTTAGTCCTGCAATGGTGTTGCATGGAGACATGATTGTTAATGGCACGGTAACTGCTAGCAAGATTGTTGCGAATAATGCTTTCTTATCTCAGATTGGTGTTAACATCATTTATGATAGAAATGCTGCACTATCTGGAAACCCCGAGGCATACTACAAGATGAAGATAGACCTAAATAGTGGGTATATCCATATAAGGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
2ea4fb951f166998451763b60c03d5aef4561dfb6e7b4238095251fb4d4a18fa
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7896
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Systematic exploration of Escherichia coli phage-host interactions with the BASEL phage collection Maffei,E., Shaidullina,A., Burkolter,M., Heyer,Y., Estermann,F., Druelle,V., Sauer,P., Willi,L., Michaelis,S., Hilbi,H., Thaler,D.S. and Harms,A. 2021 — GenBank