Protein

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Genbank accession
YP_007006998.1 [GenBank]
Protein name
pre-neck appendage protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,81
Protein sequence
MNNINKLNPIDLNCSIFTVYDYTGMSMQEILCQFFSKINELIDSQNQVIDLAKWLVGQGLKKEVAKQLNQWLIDGTLSTIINETVFRDLNNKINSNIENIKNNKKEIDKLVTVWNNLKCFNVADFGAIGDGETNNNKAFDDAINSCVENNIRGLLIPNGKFYITEGINTKGVKIIGMGDPYIPFLEWEYTRPNSKLDEYKKYLNKCRGSIITSDKNINIFTNGLYAENIGIFGNRRALTQNGIGQMDGGFGNWIEIEKVKIHGCGNCGINAEYGLITPIINQCWMYQNGNNGIRIGKNKGTYTGETNCLLIEKCFINRNESHGIYLDVKGRGYTIKNNDLEQNGEMSDPLRNNKGTDYNNIVYCCYMKVEGDGGFTSGSIDFSNNYSEETLGLLYLESPDNKICQGVKFESNMWRPYNQELYSNGLLLKGWIEGVKIGNNNMYGRHKVRVINANTYGIETDTDITNPVYKNKNISIEKHYDYNGTMVDFRSTGRVEKYSIENMIQSASYDGSTYTNVYLNKPSVPYELQEDGQGNKLIGTTFLTSDGTSIGLVVDFSWTQGLFKIRKDRTSLIKTGNAKFMENGGFTTINGGNTPVKIYVDHDNEIVIL
Physico‐chemical
properties
protein length:609 AA
molecular weight: 68676,69620 Da
isoelectric point:5,68460
aromaticity:0,10181
hydropathy:-0,47635

Domains

Domains [InterPro]
DC_0396
ATT
1–177
DC_0396 DC_0525
Coil
Unmapped
90–110
Coil IPR011050
IPR012334
STR
119–541
IPR012334
IPR024535
ENZ
120–342
IPR024535
YP_007006998.1
1 609
Architecture
ATT
STR
RBD
ATT 1-177 | STR 178-541 | RBD 542-609
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_007006998.1
1 609
Domain Start End Length (AA) Confidence
N-terminal 1 133 133 0,9884
Central domain 134 503 371 0,9842
C-terminal 504 609 105 0,9032
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-133
Central
134-503
C-terminal
504-609

Taxonomy

  Name Taxonomy ID Lineage
Phage Clostridium phage phi24R
[NCBI] 		1128071 Uroviricota > Caudoviricetes > Guelinviridae > Gregsiragusavirus > Gregsiragusavirus phi24R
Host Clostridium perfringens
[NCBI] 		1502 cellular organisms > Bacteria > Bacillati > Bacillota > Clostridia > Eubacteriales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_007006998.1 [NCBI]
Genbank nucleotide accession
NC_019523 [NCBI]
CDS location
range 16425 -> 18254
strand +
CDS
ATGAATAATATAAATAAATTAAATCCTATTGACCTCAATTGTAGTATATTTACAGTTTATGATTACACAGGAATGTCTATGCAAGAAATTTTATGTCAATTCTTTAGTAAAATAAATGAATTGATTGACTCACAAAATCAAGTTATAGATTTGGCAAAATGGTTAGTTGGTCAAGGGTTGAAAAAAGAAGTAGCAAAACAACTAAATCAATGGTTAATTGATGGTACTTTATCAACAATAATAAATGAAACTGTATTTAGGGATTTAAATAATAAAATTAACTCTAATATAGAAAATATTAAAAATAATAAAAAAGAAATAGATAAACTAGTAACAGTTTGGAATAATCTTAAATGTTTTAATGTCGCTGATTTTGGGGCAATTGGAGATGGAGAAACCAACAACAATAAAGCCTTTGATGATGCTATAAATTCATGTGTTGAAAATAATATACGTGGTTTGTTAATTCCTAATGGAAAATTTTATATTACAGAGGGCATTAACACAAAGGGTGTAAAAATTATAGGAATGGGTGACCCCTATATTCCATTTTTAGAATGGGAATATACAAGACCAAACTCAAAATTAGATGAATATAAAAAATATTTAAATAAGTGTCGTGGTAGTATAATAACATCAGATAAAAATATTAATATATTTACTAATGGTTTATATGCTGAAAATATAGGTATTTTTGGTAATAGAAGAGCATTAACACAGAATGGTATTGGTCAAATGGATGGTGGTTTTGGTAACTGGATTGAAATAGAAAAAGTTAAAATACATGGATGTGGTAATTGTGGGATTAATGCAGAATATGGGTTAATAACCCCTATAATAAATCAATGTTGGATGTATCAAAATGGTAACAATGGCATAAGAATTGGTAAAAACAAAGGAACCTATACTGGTGAAACAAATTGTTTACTAATTGAAAAGTGTTTTATAAACAGAAATGAAAGTCACGGTATTTACTTAGATGTAAAAGGTAGAGGGTATACTATTAAAAACAATGACTTAGAGCAAAATGGTGAAATGAGCGACCCATTGAGAAATAATAAAGGTACTGATTATAATAATATAGTTTATTGTTGTTATATGAAGGTTGAGGGTGATGGTGGATTTACTAGTGGTTCAATAGATTTTAGTAATAACTATTCGGAAGAAACTTTAGGTTTATTATACTTAGAAAGTCCCGATAATAAAATATGTCAAGGTGTAAAGTTTGAATCTAATATGTGGCGACCTTATAATCAAGAATTATATTCAAATGGATTACTGTTAAAAGGTTGGATTGAAGGCGTTAAAATTGGTAATAATAATATGTATGGCAGACATAAAGTAAGAGTTATCAATGCAAATACCTATGGTATAGAAACTGACACGGATATAACAAACCCAGTATATAAAAATAAAAATATATCTATTGAAAAACATTATGACTATAATGGTACAATGGTTGACTTTAGAAGTACAGGAAGAGTTGAAAAATATTCTATTGAAAACATGATACAATCAGCATCTTATGATGGTAGCACATACACCAATGTATATTTAAATAAACCTAGCGTACCATATGAGTTGCAAGAAGACGGTCAAGGTAATAAATTAATAGGGACGACGTTTTTAACATCAGACGGTACAAGTATTGGTTTAGTTGTCGACTTCTCATGGACTCAAGGATTATTTAAAATAAGAAAAGACAGAACATCATTAATCAAAACTGGTAACGCTAAGTTTATGGAAAATGGAGGTTTTACAACAATAAATGGTGGTAATACACCAGTAAAAATCTATGTTGACCATGACAATGAAATAGTAATTTTATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
63df4a306f422b4da3ab90dc60f8cb520876da6e78473eb15f65198f34bca648
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6712
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50