Protein

View in Explore
Genbank accession
XHY12370.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect
Probability 0,90
Protein sequence
MLRPKLGRIWGDSNSVARRDPGDEKYLKGWLSEIPTYQVLNYLQWKTDSTLQALAERGVLEWGGDATYRNGAAVWDESNGVIYIAKLDGPSKTLKPSSNLAQWTPSALQITRADYDAISAAIASHIADVTSNPHGLTPGRLGTYTTAQIDALVAQYKKMVSDHAARKDNPHGVTATDIGAVPVTGGAYTGNVEMKTGQVLLSADGVRKIKADDTGVYMANSAGQVGVDAAGEGFVKTGNAPATKIITKATFADNKAAVEATYAVQQPVFYLPLASDLNVYIGGGTVQADQNGGALDWNPSILNGVIFGNNTQYDNRVVYTYKPLEGLKEATICVDVFLEGTGGTTTTPELYASFGAAAGCGVIQVNKNNTVRFWSETGTTGTVPLPTGVWIRLVGVRTTTSLSLYLNGVMVSTIAVNNANITGSDYNFLRANVQDQAYQRLVKAKNFKLWIGALTAKQISTL
Physico‐chemical
properties
protein length:462 AA
molecular weight: 49273,91610 Da
isoelectric point:7,64964
aromaticity:0,08442
hydropathy:-0,14567

Domains

Domains [InterPro]
DC_0782
STR
12–457
DC_0782
G3DSA:2.60.120.200
STR
274–462
G3DSA:2.60.120.200
IPR013320
STR
306–462
IPR013320
PF13385
LEC
355–460
PF13385
XHY12370.1
1 462
Architecture
STR
STR 12-462
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XHY12370.1
1 462
Domain Start End Length (AA) Confidence
N-terminal 1 263 263 0,7436
Central domain 264 451 189 0,4653
C-terminal 452 462 10 0,9958
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-263
Central
264-451
C-terminal
452-462

Taxonomy

  Name Taxonomy ID Lineage
Phage Erwinia phage EaPF7
[NCBI] 		3368495 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Erwinia amylovora
[NCBI] 		552 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XHY12370.1 [NCBI]
Genbank nucleotide accession
PQ431420.1 [NCBI]
CDS location
range 2476 -> 3864
strand -
CDS
ATGCTGCGTCCTAAACTTGGCCGAATTTGGGGTGACTCGAATTCGGTTGCTCGTCGTGACCCAGGCGACGAGAAATATTTAAAAGGTTGGTTGTCTGAAATCCCAACATACCAAGTTCTGAACTATCTTCAATGGAAGACAGATTCAACACTGCAAGCTCTTGCTGAACGTGGTGTGCTTGAATGGGGTGGTGATGCAACTTACCGAAATGGTGCTGCGGTTTGGGATGAATCAAATGGAGTGATTTACATTGCCAAACTTGATGGTCCAAGCAAGACGCTGAAACCAAGTTCAAACTTGGCTCAGTGGACTCCAAGTGCATTGCAGATTACTCGCGCAGATTATGATGCAATTTCTGCGGCAATCGCAAGCCACATCGCTGATGTAACAAGTAACCCTCATGGATTAACTCCGGGAAGACTTGGAACATACACCACTGCACAAATTGATGCGCTGGTTGCTCAGTACAAGAAAATGGTTTCGGACCATGCAGCAAGGAAAGATAACCCACATGGAGTTACAGCTACTGACATTGGTGCAGTTCCTGTAACTGGTGGTGCGTACACTGGTAATGTTGAAATGAAGACTGGTCAAGTTCTTCTTTCTGCCGATGGTGTACGTAAAATCAAAGCTGATGACACTGGCGTATACATGGCGAACAGTGCAGGTCAAGTTGGTGTTGATGCTGCTGGTGAAGGTTTTGTCAAAACTGGAAATGCTCCAGCAACCAAAATCATTACTAAAGCAACATTTGCAGATAACAAAGCTGCTGTTGAAGCAACCTATGCAGTACAGCAACCTGTGTTCTATTTGCCTCTCGCATCTGATTTGAATGTCTACATTGGTGGCGGTACTGTTCAGGCAGACCAGAATGGTGGTGCATTGGATTGGAATCCATCTATACTGAATGGTGTAATCTTTGGAAACAATACACAATATGACAACCGTGTTGTGTATACATACAAACCTCTTGAAGGTTTGAAAGAAGCAACCATTTGTGTTGATGTTTTCCTTGAAGGAACTGGCGGAACTACAACTACACCTGAGTTGTATGCATCGTTTGGTGCTGCTGCTGGTTGTGGTGTTATTCAAGTTAATAAGAATAACACAGTTCGTTTCTGGTCTGAGACTGGAACAACTGGAACAGTTCCACTTCCAACCGGCGTCTGGATTCGTCTTGTTGGCGTAAGGACTACAACCTCTTTGTCATTGTATCTCAATGGGGTTATGGTCAGCACGATTGCAGTCAACAATGCAAACATCACAGGAAGTGATTACAATTTCCTCCGTGCAAATGTTCAAGACCAAGCATATCAGAGATTGGTTAAAGCTAAAAACTTTAAGCTCTGGATTGGTGCTTTGACGGCAAAACAAATCTCAACGCTATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
554f484eb1d1e326370826000e78da92d572be44d9b2317cc85f95b69f36273e
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7770
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Characterizations of Newly Isolated Erwinia amylovora Loessnervirus-like Bacteriophages from Hungary Lomadze,E., Schneider,G., Papp,S., Bali,D., Princz-Toth,R. and Kovacs,T. — — GenBank