Protein

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Genbank accession
YP_009626027.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence RBPdetect
Probability 0,90
Protein sequence
MAEELVKGLTGKSNSPFVIKRDDGGDDVTVTPAADGSWSVELSSEVKKTVNFSFVVGTEEKASLSIPFVDVERFEDVNYSVVTTEVGRSAKIHTAPIENWGRNPVPHNSVRFYYADTDELIGKVFTDKYGIASIEVPAESEQKTRSVEARCGSRKKTFNIEWKAAGQSPKVFIEDLRVTDKVEDIKVGRLSCVVVNEHGESLPDMEIGIYDLDRLTDVTDGNYESLGDTHFVAWDDPDWGVVNSPRHLMVYCGDFHQEIEVVDGDYINTVPTKANLVSDFSAAIAYGHPVMAEVGFNDEGDDFEIHGYQYGRFESSDSQDRDTFNMRPKGTSIFPMETYWGRDRTYKVMNKDRTELLEFPVKFAIIRDFFMFCPVTTALKNTTFTVPYYVEGTDGKPMAGVKVSLKEVGVGKDFYVEGGTDDRGFVYLDVPYVEGESQRKFRARCGLKDIDVDLTWDDGTGLHPTTFTNLQHEEIGDALIHDIYVQDKDVKQIGEQFIEIRATLLDQNGNPCEYTEFLVHDDRGNTVGTYECNDEGKIYLKYRGNAGYHNLTFISGNAVLTTSFRLKGVKKMLPFATGDLLVKPGVTADIPFFYLDEWGEPVANKQIHCTFDDPTHNYGSSSTDKYGFGVGHAYDTHLNEPHTTFYLVDKDDTSTMLSYNLVFTDEANPYPASVGLWKWSKGTTPTVGGHYGMYFHHADKTAPYTDEVLYGWVCPSTGEHDLYKRQPDENGLVVFDSYPVGNNDTPYLEVFAGNNGNTMTISYSVTEPLHGRATIDPASIPDEILSSTPFTLRGQLHAPDGGPYDVNQEHTVRIFGVPVNLSGGNGRTSSIYSDREGEFEIEFIVSKPGDHLFLIHTSAEDYLTSLAKEVKQGPVAVGSKFTKPDLEQPIYVGDRVPIEGGWVDADGNYVYIEDTVNYSLDGRRFYSNDGVSIQDYTFDHSGSTINTEGEHTYTVEGHDGHKAEITFTVLPKPAE
Physico‐chemical
properties
protein length:975 AA
molecular weight: 108780,13190 Da
isoelectric point:4,71033
aromaticity:0,11385
hydropathy:-0,46390

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009626027.1
1 975
Domain Start End Length (AA) Confidence
N-terminal 1 81 81 0,8171
Central domain 82 823 743 0,8197
C-terminal 824 975 151 0,1560
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-81
Central
82-823
C-terminal
824-975

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage VP4B
[NCBI] 		1262540 Uroviricota > Caudoviricetes > Chimalliviridae > Tidunavirus > Tidunavirus VP4B
Host Vibrio harveyi
[NCBI] 		669 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009626027.1 [NCBI]
Genbank nucleotide accession
NC_042136 [NCBI]
CDS location
range 66967 -> 69894
strand +
CDS
ATGGCTGAAGAATTAGTCAAAGGTTTGACTGGTAAATCCAATTCACCATTCGTCATTAAACGTGACGACGGCGGAGACGATGTAACTGTCACACCAGCCGCTGACGGGTCTTGGTCGGTAGAGTTAAGCTCCGAAGTAAAGAAAACGGTGAATTTCAGTTTCGTAGTAGGGACCGAAGAAAAAGCCAGTCTATCTATTCCGTTCGTTGACGTGGAACGTTTTGAAGACGTCAACTATTCCGTAGTTACCACGGAAGTAGGACGCTCTGCTAAAATCCATACCGCGCCTATCGAAAACTGGGGGCGTAATCCGGTTCCTCACAATAGTGTGCGTTTCTATTACGCTGACACCGACGAACTAATCGGTAAAGTGTTTACGGATAAATACGGGATTGCTTCTATTGAGGTCCCAGCCGAGTCTGAACAAAAAACGCGTAGTGTGGAAGCTCGTTGTGGTTCTCGCAAGAAAACATTTAACATCGAGTGGAAAGCGGCGGGTCAGTCACCTAAAGTCTTCATCGAAGATCTACGTGTCACCGATAAAGTCGAAGACATCAAAGTTGGTAGACTGAGTTGTGTGGTGGTGAATGAACACGGTGAATCACTTCCAGATATGGAAATCGGTATTTACGATTTGGATAGACTGACAGACGTTACTGATGGTAACTATGAAAGTCTCGGTGATACTCACTTCGTTGCTTGGGACGATCCAGATTGGGGTGTTGTTAATTCACCACGTCACTTGATGGTGTACTGTGGTGACTTCCATCAGGAAATCGAAGTCGTTGATGGTGATTACATTAATACAGTTCCAACTAAGGCGAACTTAGTAAGTGATTTCTCGGCAGCGATAGCTTACGGCCATCCTGTTATGGCGGAAGTTGGGTTCAACGATGAAGGGGATGATTTCGAAATCCACGGGTACCAGTATGGTCGTTTTGAATCCAGTGATAGTCAGGATCGTGATACGTTTAACATGCGTCCTAAAGGCACTTCCATTTTCCCTATGGAAACTTATTGGGGTAGGGATCGTACTTACAAAGTCATGAACAAAGATCGCACTGAGTTACTGGAGTTCCCGGTTAAGTTCGCTATTATCCGTGACTTCTTTATGTTCTGTCCAGTAACCACGGCATTGAAAAACACCACGTTTACGGTTCCTTACTACGTAGAAGGTACTGACGGCAAACCTATGGCCGGTGTGAAGGTTTCTTTGAAAGAAGTAGGGGTAGGTAAAGATTTCTACGTAGAAGGTGGTACAGACGACCGTGGATTTGTTTATTTGGACGTTCCTTATGTGGAAGGTGAATCTCAGCGTAAGTTCCGAGCACGTTGTGGTCTGAAAGACATTGACGTGGATCTAACATGGGATGACGGTACGGGCTTACACCCTACCACGTTCACTAACTTGCAACACGAAGAAATTGGTGATGCTTTAATTCACGATATTTACGTTCAAGATAAGGACGTTAAACAAATCGGTGAGCAGTTCATTGAAATCCGAGCAACGTTGTTGGACCAGAACGGAAATCCTTGTGAATACACTGAGTTCTTAGTACATGATGATCGTGGTAATACCGTTGGGACGTACGAGTGTAATGACGAAGGTAAGATTTATCTAAAATACCGAGGTAATGCCGGTTATCATAATCTGACCTTTATCTCAGGTAATGCGGTGTTGACTACCTCTTTCCGTCTTAAAGGTGTTAAGAAAATGCTGCCGTTCGCCACGGGCGATCTGTTAGTAAAACCGGGAGTTACCGCAGACATTCCATTCTTCTACTTAGATGAATGGGGTGAACCGGTCGCTAATAAACAAATCCATTGTACCTTTGATGACCCTACTCATAACTACGGTAGTTCTTCTACTGATAAGTACGGGTTCGGCGTAGGACACGCCTACGACACCCACTTGAATGAACCTCACACTACGTTCTACTTAGTTGACAAAGACGACACGTCTACCATGTTGTCTTACAACCTAGTCTTTACTGACGAGGCGAATCCTTATCCTGCTTCAGTAGGTTTGTGGAAATGGTCTAAGGGCACCACACCTACGGTAGGTGGACACTACGGTATGTACTTCCATCACGCCGATAAAACAGCGCCGTATACCGATGAAGTATTGTACGGTTGGGTGTGTCCGAGTACAGGTGAACACGATCTATATAAGCGTCAACCTGATGAAAACGGATTAGTCGTCTTTGATTCCTATCCAGTAGGGAACAACGACACACCTTATCTGGAAGTCTTCGCGGGGAACAACGGTAATACGATGACGATATCGTACAGTGTAACCGAACCATTACATGGTCGCGCTACTATCGATCCAGCGTCTATCCCTGATGAGATTTTATCATCTACACCGTTCACACTTCGAGGACAACTCCACGCTCCTGATGGTGGCCCTTATGACGTAAACCAAGAACACACTGTTCGTATTTTCGGTGTTCCGGTTAACCTTTCTGGTGGCAATGGTCGTACTTCTTCCATTTACTCTGACCGAGAAGGTGAGTTTGAAATTGAATTCATCGTTTCAAAACCGGGTGATCACTTGTTCTTAATCCATACGTCAGCAGAAGACTATTTGACTTCGTTGGCTAAAGAGGTCAAACAAGGTCCAGTAGCGGTGGGTTCCAAATTCACTAAACCTGATTTGGAACAACCAATTTACGTTGGTGATCGTGTTCCTATTGAAGGTGGTTGGGTGGACGCGGATGGTAATTATGTCTACATAGAAGATACGGTTAACTACTCTTTGGATGGTCGACGTTTCTACTCTAACGATGGGGTGTCTATCCAAGACTACACGTTTGATCATAGTGGTAGTACGATCAACACGGAAGGTGAACACACGTACACCGTGGAAGGTCATGACGGTCATAAAGCCGAAATTACTTTCACGGTACTTCCTAAACCTGCGGAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
0352a4cec7a0e185462224c7c9c61e1c696c02f95af517ce312707d8a47b48d4
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,3349
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence of a novel phiKZ-like Vibrio phage Luo,Z. and Yu,Y. 2015-12 — GenBank