Protein

View in Explore
Genbank accession
AFU64550.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,94
Protein sequence
MANKPTQPVFPLGLVSEEQSTLAGILNTGTIEHGPDAVLTLPEGNASAGLPSSVRYNADSDEFEGFYENGGWLPLGGGVIRWEALPHASTATLTEGRGYLVDNSTGVSTVVFPSPTRIGDSVTVCDLYGKFSLYPLTIDPNGRPMYGSVEPMTLSTDSVSATFTWSGDARGWIVTAGVGLGQGRVYSRTIFTETVASDTAQVTLTTQPSIVDVYVDGKRLLESKYSLNGFNVDFSPSILSGSELQVIQYVPIQLGVGGGGSGGGTVITWIYNSGSAVGGETEIELDVDAEDVSEIYIGGSRQQKGLGFNYDPITKIITLADELEAGDEVVVVINGDPTLYNQIDHTPNEVARSTNVPVSQVILTSDTITKLDGKTVIYDVNAQKMWSLPSGIPTGASIVSVSGSNLTYAPGNVVVPLLPAPGSKDALEAYKNELLAGNTGLVSASAVVVTPQGTLAEMQYYVTPEQFSHLVTAGEYVDENTDFTLAVQGAVDYAASHPGVIVRGTEKVYGVSRILVTVGVKVIDGLKLKCVVANTDTLLYSFVDTGHTDLQIRNCILNGNNNTRKGIIVSGVIRATIEKNYVYGLDGTGEAYGIRIGTTSTTSMNINNKISDNVIEMPTDPWAGTGNYAICGIGMIGQITSLYGGLDTNAGVPLFPSTITLRDTIIEGNFISGGTHGVQGLGLFRTLITKNHIMGNTHRNINLSPNCQRVNIVGNLLIEGGSSGVNVAWGCRWINISGNHIQTSTASVSPSDDAAIQLYKGVDQCTVSGNTILGDWKYSVYMGAGVTNVSVNANGLFAGSLASIAVESDWVLTADYPLAIYSSSRNPNTTPIAGDTGNINIGGNAYGAGSCAIYLAATNSKAMYNVNIHDEVINSVTSRPHVVYAYDAGTLMTDGSLTNIAARGATASKYYLSRGRGAFNVIRDVTALDDPKGEVTVSGGTPSAVFGPNLYIASGTITDFTGAQSGDIINLRMGDGVVLTHNSTVMRLKGGVNATASGGLAIMTLQRRAGVWFEMSRNF
Physico‐chemical
properties
protein length:1019 AA
molecular weight: 107076,84620 Da
isoelectric point:4,77211
aromaticity:0,07360
hydropathy:0,03425

Domains

Domains [InterPro]
DC_1064
ATT
3–216
DC_1064 G3DSA:3.30.2020.50 DC_1445 IPR039448 DC_1714
G3DSA:3.30.2020.50
ATT
340–421
G3DSA:3.30.2020.50 IPR012334 IPR006626
IPR011050
STR
499–783
IPR011050
IPR006626
Unmapped
547–571
IPR006626 IPR006626 IPR006626 IPR006626 IPR006626
AFU64550.1
1 1019
Architecture
ATT
ATT
STR
RBD
ATT 3-216 | ATT 335-421 | STR 422-886 | RBD 887-1019
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AFU64550.1
1 1019
Domain Start End Length (AA) Confidence
N-terminal 1 477 477 0,9957
Central domain 478 930 454 0,9937
C-terminal 931 1019 88 0,9803
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-477
Central
478-930
C-terminal
931-1019

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage SKML-39
[NCBI] 		1204528 Uroviricota > Caudoviricetes > Pantevenvirales > Aglimvirinae > Agtrevirus
Host Salmonella
[NCBI] 		590 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AFU64550.1 [NCBI]
Genbank nucleotide accession
JX181829 [NCBI]
CDS location
range 154373 -> 157432
strand +
CDS
ATGGCTAATAAACCAACACAGCCTGTTTTCCCTCTCGGTCTGGTGTCTGAAGAGCAGTCTACTTTGGCTGGTATCCTCAACACGGGTACGATTGAGCATGGACCAGATGCTGTCCTGACTTTACCTGAGGGTAATGCCAGCGCAGGTCTCCCGTCTTCTGTTCGCTACAATGCCGACTCCGACGAATTTGAGGGCTTCTACGAAAATGGTGGATGGTTGCCGCTGGGTGGCGGTGTTATCCGCTGGGAAGCCCTTCCGCATGCCTCTACGGCAACGCTCACTGAAGGGCGGGGCTATCTGGTAGACAACTCCACGGGCGTCTCTACGGTGGTGTTTCCTTCCCCTACGCGCATTGGTGATTCTGTTACAGTCTGTGACTTGTATGGGAAGTTCTCCCTGTATCCTCTGACCATCGATCCAAACGGACGCCCAATGTACGGCTCTGTAGAGCCTATGACTCTCTCCACAGATAGTGTATCCGCAACCTTTACCTGGTCCGGAGATGCGCGTGGTTGGATTGTGACTGCTGGTGTCGGTCTTGGTCAGGGGCGTGTGTATAGCCGTACCATCTTCACTGAGACAGTTGCATCAGACACAGCTCAGGTAACTCTCACCACACAGCCGTCCATTGTTGATGTGTATGTTGACGGGAAGCGCCTGCTAGAGTCAAAGTATTCGCTCAATGGTTTCAATGTCGACTTCAGTCCATCAATCCTATCGGGTTCCGAGCTGCAGGTCATTCAGTATGTGCCTATCCAGTTGGGTGTAGGCGGTGGTGGTTCTGGTGGCGGTACAGTCATCACATGGATTTACAACAGCGGTTCCGCAGTCGGTGGTGAGACTGAAATTGAATTGGACGTCGATGCCGAAGACGTGTCTGAGATCTATATCGGTGGCTCCCGTCAACAGAAAGGTCTGGGCTTCAATTACGACCCTATTACGAAGATCATCACGCTGGCCGACGAACTCGAAGCTGGGGATGAGGTTGTCGTCGTTATTAACGGCGATCCAACTTTGTACAACCAGATTGACCACACCCCGAATGAAGTGGCGCGTTCCACCAACGTTCCTGTGTCTCAGGTGATTCTGACATCTGATACCATCACCAAATTGGATGGTAAGACAGTTATATACGACGTGAACGCACAAAAGATGTGGAGCCTGCCTTCGGGTATTCCGACAGGGGCTTCTATTGTCTCTGTGAGCGGAAGCAACCTGACCTACGCTCCTGGCAACGTCGTGGTGCCACTGTTACCAGCCCCTGGCAGCAAAGATGCTCTCGAAGCGTATAAAAACGAGTTGCTGGCCGGAAATACAGGTCTGGTGTCTGCGAGCGCTGTCGTTGTGACGCCCCAGGGTACTTTGGCCGAAATGCAATACTATGTTACGCCAGAGCAATTCTCTCATCTGGTTACGGCTGGTGAGTACGTCGATGAAAACACAGATTTCACTCTGGCTGTTCAGGGTGCTGTTGATTATGCTGCGAGTCATCCAGGAGTTATCGTCCGTGGCACAGAAAAGGTCTATGGTGTAAGTCGTATTCTGGTGACGGTTGGTGTCAAAGTTATCGATGGTCTGAAGCTGAAGTGTGTAGTTGCTAACACAGACACACTGCTCTACTCCTTCGTCGATACTGGGCACACCGATTTACAAATCAGAAACTGTATCCTCAACGGTAACAACAACACCAGAAAGGGTATCATCGTTTCCGGTGTCATCCGTGCGACTATCGAGAAGAACTATGTTTATGGTTTGGACGGGACTGGCGAGGCTTACGGTATCCGTATCGGCACGACCAGCACGACTTCCATGAACATCAACAACAAAATCAGTGATAACGTAATTGAGATGCCAACCGATCCTTGGGCGGGTACAGGCAACTATGCGATTTGTGGCATCGGGATGATTGGGCAGATTACATCCCTTTATGGCGGCCTGGACACCAATGCTGGGGTTCCGTTGTTCCCATCCACGATCACGCTGCGCGATACCATCATTGAAGGAAACTTCATTTCTGGGGGCACCCATGGTGTTCAGGGTCTGGGTCTGTTCCGCACACTGATTACGAAGAACCACATCATGGGGAACACCCACCGAAATATCAACCTCAGTCCGAACTGTCAGCGAGTAAATATCGTCGGCAACCTTCTGATTGAAGGCGGTAGTTCAGGTGTCAACGTTGCTTGGGGTTGTCGTTGGATCAATATCTCTGGTAACCATATCCAGACTTCGACTGCTTCTGTATCCCCATCAGATGATGCAGCAATCCAGCTCTACAAGGGCGTTGACCAATGCACCGTCAGCGGGAACACAATCCTCGGCGACTGGAAATACAGCGTTTACATGGGTGCTGGCGTTACCAACGTGTCTGTCAATGCTAACGGCTTGTTTGCTGGTTCCCTGGCGAGCATCGCGGTGGAATCGGATTGGGTGTTGACCGCAGACTATCCCCTGGCGATCTACAGTAGTTCCCGTAACCCGAACACCACTCCTATCGCTGGCGACACAGGCAACATCAATATCGGCGGTAACGCGTATGGAGCGGGATCTTGCGCTATCTATCTGGCCGCCACCAATAGCAAAGCGATGTACAACGTCAACATCCATGACGAAGTCATTAACTCGGTCACGTCTCGTCCGCATGTTGTTTATGCATACGACGCCGGAACCCTGATGACTGATGGTTCCCTGACCAACATTGCTGCTCGTGGGGCTACTGCGAGCAAGTATTATCTCAGCCGTGGGCGCGGCGCTTTCAACGTGATCAGAGATGTTACTGCTCTTGATGATCCGAAAGGCGAAGTGACAGTGTCGGGTGGCACCCCATCTGCGGTGTTTGGACCGAATCTGTATATCGCTTCAGGAACCATCACTGACTTCACTGGTGCACAATCGGGTGATATCATCAACCTGCGTATGGGTGATGGGGTTGTCCTCACTCACAACAGTACTGTGATGCGCCTCAAAGGTGGGGTGAACGCCACGGCTTCCGGTGGCTTGGCCATCATGACTCTCCAGCGCCGAGCTGGTGTATGGTTCGAGATGTCTCGCAACTTCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
15ebf9cf14616eb31c2c48cd73b763666d3b8e78dd91ac227bb600be7ff6f25d
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7282
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Bacteriophages quickly and effectively reduce contamination of various foods with Salmonella Woolston,J., Parks,A.R., Hanna,L.F., Charbonneau,D. and Sulakvelidze,A. 2016-07-02 — GenBank