Protein

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Genbank accession
YP_002128497.1 [GenBank]
Protein name
tail fiber protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,89
TSP
Evidence RBPdetect2
Probability 0,95
TF
Evidence UniProt/TrEMBL
Probability 1,00
Protein sequence
MLKIYEAYAPRANPPDANYPLGSVKNVTVPGAKDGTPLDNKWGNNTEGFYQALLADAGIVANGQVEKVGASQLLDAVKATKGSVDNVDALRLKTGGQQGDTVFVTSYYAGWASTASGAQGGGLYVLNKSSTRIDNIGAIAAAGGGMWEAVFQSGVIDASRFGMKGDLLTVPAFDSGPALNNAILFAAQGSGNETGMTISVPSMNYKITTKVLIPSWVTIDFNGSTLTGSGFGSSDTVMFETAYYNSGVIISNIGTPAESKRVIGCKIRNGRIENAKYAFNLYNFNEGSIVEEFSFSDVASAIYASRSFYGEFKTLMCRGSAGGTASPAYTFNDFVNVENIVGVFVQGRINGWLFNGGINGLSLSNNGAEGLTGYGMKFIGEVKPINIDSNYFEGITGPALDFSDSSQKNSVTIDNNWFFLVEKEFMAFKCLAVKLEMEMNLIAAD
Physico‐chemical
properties
protein length:445 AA
molecular weight: 47185,46090 Da
isoelectric point:4,84327
aromaticity:0,11011
hydropathy:-0,01663

Domains

Domains [InterPro]
DC_0934
STR
1–437
DC_0934
IPR011050
STR
174–417
IPR011050
YP_002128497.1
1 445
Architecture
STR
STR 1-437 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_002128497.1
1 445
Domain Start End Length (AA) Confidence
N-terminal 1 165 165 0,9949
Central domain 166 434 270 0,9934
C-terminal 435 445 10 0,0985
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-165
Central
166-434
C-terminal
435-445

Taxonomy

  Name Taxonomy ID Lineage
Phage Iodobacter phage PhiPLPE
[NCBI] 		551895 Uroviricota > Caudoviricetes > Iodovirus >
Host Iodobacter sp. CdM7
[NCBI] 		641420 Bacteria > Proteobacteria > Betaproteobacteria > Neisseriales > Chromobacteriaceae > Iodobacter

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_002128497.1 [NCBI]
Genbank nucleotide accession
NC_011142.1 [NCBI]
CDS location
range 36246 -> 37583
strand +
CDS
ATGTTAAAAATTTATGAAGCATACGCCCCCCGAGCAAATCCACCGGATGCAAATTACCCGCTTGGGTCAGTTAAAAATGTAACGGTGCCAGGCGCAAAAGATGGCACGCCACTAGATAATAAATGGGGTAATAATACTGAGGGGTTTTATCAGGCTTTGCTTGCTGATGCGGGAATTGTTGCGAACGGTCAAGTCGAAAAGGTTGGTGCTTCTCAATTGCTTGATGCAGTAAAAGCAACAAAAGGTTCAGTTGATAATGTTGATGCCCTTAGATTAAAAACAGGCGGCCAGCAAGGGGATACTGTGTTTGTCACCAGTTATTATGCAGGATGGGCTTCCACAGCATCAGGGGCACAAGGAGGGGGCTTATATGTTCTGAATAAATCCTCTACTCGGATTGATAATATTGGGGCAATTGCTGCAGCCGGTGGCGGCATGTGGGAAGCTGTTTTTCAATCAGGGGTAATTGATGCGTCACGATTTGGAATGAAAGGGGATTTACTTACTGTTCCAGCCTTTGATAGTGGACCCGCATTAAATAATGCCATTTTATTTGCAGCCCAAGGATCTGGAAATGAAACAGGGATGACAATCAGCGTCCCGTCAATGAATTACAAAATAACAACTAAAGTGCTTATCCCTAGCTGGGTAACCATTGATTTTAATGGATCAACATTAACAGGTTCTGGCTTTGGTTCTTCAGATACTGTTATGTTTGAAACTGCCTATTATAATAGCGGAGTAATAATATCAAACATAGGAACTCCAGCAGAATCAAAACGGGTGATTGGATGCAAAATAAGAAATGGTCGCATTGAAAATGCAAAATATGCTTTTAATTTATACAACTTTAATGAAGGAAGTATTGTAGAAGAATTTTCTTTTAGTGATGTTGCGAGTGCCATATATGCATCGAGATCTTTCTATGGTGAATTTAAAACATTAATGTGTAGGGGTAGTGCCGGTGGTACGGCATCACCTGCCTATACTTTTAATGATTTTGTTAATGTTGAAAACATTGTTGGTGTATTTGTTCAGGGAAGAATTAACGGTTGGCTTTTTAACGGTGGGATAAACGGGCTGTCACTGTCAAATAATGGCGCAGAGGGATTAACTGGGTATGGAATGAAATTTATTGGCGAAGTAAAGCCAATCAATATAGATTCAAATTATTTTGAAGGAATCACTGGTCCGGCTTTAGATTTTTCAGACTCATCGCAAAAAAACTCAGTAACAATTGATAATAATTGGTTTTTTCTTGTGGAAAAGGAATTTATGGCGTTCAAATGCTTGGCGGTAAAATTGGAAATGGAAATGAATTTAATAGCTGCGGATTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
b6a7fc09aabc6a7676a7c1a41bcebd762b36b552a2dc9b287c8ba1efbae93d4d
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8655
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50