Protein

View in Explore
Genbank accession
XPP56540.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,91
Protein sequence
MASTPTVIGRVYGDIYTIHQPSTKAYRVLDEVRLPTGWYRAKSDVPIGVAITDATYWQKVYTPESTLPAILTEHDIDAGYARGTEIRLIDGWYRAILEIPAGNAIALTDTQFWEKVYVPSEAQVYIPPILLADKVEDVWRPWNAYKKLTEIRGNDAWYRALQDIPEGAGIQLTQEAWWQKIYTPVAGNLPTIYKTHDVANGYAKGDEVRLSDGWWYALQAVPADTALEEGAFWTKTFTPSSGIAEITAQMIMDAIKAAYPQGSDDSFLNQQGEWAQVGQGGGVISKTSIMNALLEGSPSEPSSSKFLAEDGNFHLVAADAKFLQLESIGATISEAQAYWETNRAECIAIATRNQLAIDKALGKIDELGNPIPDDNDVHVFNVELPEGYFPIEGDLIIPPRAGKFLGRGAYRRFKSIPKVGGGNVQGAILEYPTAFMPIGGNDKNGILTQCGSSHVGRFAIIGHLKDNSDGGNGLITGHTPPVPNAATSQVPTNWAASLPNLFTQDRFGEPDTVRFAVDAQNLIAQPNGDVHIIAPFKATFNGPDDLEGLLRDDNIDIPVVRWIRTFDADGKELERWSNIGSNNFGWLNYPGAPGAHQVEVKDSTGAKVKPVMWGALDLVGSNDVSRNTTGKPAKDDLGNFIEVDRAYHLPISDGDTTTTVVIPGGLRDEQVSHPTDPTLNVSATPFDVATIEVSFYHVDRIQTLLSQLFPYLGASYSSSARCQFNIFESIVIDSMPWNGFVGIDGAYNNHTCIMARENGLDGFFFPGGYEDYMHNSFDSCGAVNNGGWALYLREPFRGISGLPNPEEGYSSGNGWPTGNVGDVPVTLDRFISHKKLTYTASLNDFSNFDCYGNRGGALYIGADSNTINTGGSEHHFDAHNIDPLGRYDDWVDSQGVTMPGVYIDTTDYENEKRAKGDWSPLRWAACYVFAAQARQNDLTITGTPTDTRRVLFGDWVNKYQNPAPQHGASNRYRAITCNHYVHPRQDNYGSLVDVRSKSYANIFFTQYGEHEHTGDILSNGSGILEIVGNFAKKDVFVFQPFLYPISPPDNFVNNDMFMVVTNKHPDSPCPGGKFSLSADRLGIVGQTDISTLYVNSALDNLAGTVLAPGESKDDTIIVPTIAGFDPETDDIDQITVDLTYISDVQDTRTAEMLPPYVRPVVQGFRRWVNGAGDTRITIYYSWVNMSTTETYTADPTDEKHMVVYRITAHEPNRVLAGI
Physico‐chemical
properties
protein length:1218 AA
molecular weight: 133864,54810 Da
isoelectric point:4,79218
aromaticity:0,10591
hydropathy:-0,32126

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XPP56540.1
1 1218
Domain Start End Length (AA) Confidence
N-terminal 1 348 348 0,9758
Central domain 349 628 281 0,9350
C-terminal 629 1218 589 0,3141
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-348
Central
349-628
C-terminal
629-1218

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage Bakedbeans
[NCBI] 		3388590 No lineage information
Host Vibrio campbellii
[NCBI] 		680 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XPP56540.1 [NCBI]
Genbank nucleotide accession
PQ768826.1 [NCBI]
CDS location
range 32997 -> 36653
strand +
CDS
ATGGCAAGCACACCAACTGTTATTGGTCGCGTGTACGGTGATATATACACCATACACCAACCATCTACAAAAGCTTACCGCGTCTTAGATGAAGTTCGACTACCAACTGGATGGTATCGAGCTAAGTCAGACGTTCCTATTGGTGTAGCAATCACAGATGCTACATATTGGCAAAAAGTGTACACACCTGAGTCTACATTACCTGCTATTTTAACTGAACATGATATCGATGCAGGTTATGCACGTGGAACGGAAATTCGCCTTATTGATGGGTGGTACCGTGCAATCTTGGAGATCCCTGCAGGTAATGCTATCGCTTTGACTGATACTCAGTTCTGGGAAAAGGTATATGTACCATCGGAAGCTCAAGTATACATCCCACCTATTCTACTTGCGGATAAAGTTGAAGATGTGTGGCGTCCATGGAATGCATATAAGAAACTAACTGAGATCCGCGGCAACGACGCATGGTATCGTGCCCTTCAAGATATTCCTGAAGGTGCAGGTATTCAGCTAACCCAAGAAGCGTGGTGGCAGAAGATTTACACTCCGGTTGCCGGTAATCTTCCTACGATCTACAAGACTCACGACGTTGCTAATGGATACGCTAAGGGCGATGAAGTTCGTTTATCTGACGGTTGGTGGTATGCACTCCAAGCTGTCCCTGCAGATACTGCTCTTGAAGAAGGTGCATTTTGGACTAAAACATTCACACCATCATCAGGTATCGCTGAAATCACAGCTCAGATGATTATGGATGCTATTAAAGCTGCATATCCTCAAGGTAGTGATGATTCGTTCCTAAACCAACAAGGCGAATGGGCTCAAGTAGGTCAAGGCGGTGGTGTAATCAGCAAGACTTCAATCATGAACGCGTTGCTTGAAGGATCGCCATCAGAGCCATCATCTTCTAAGTTTTTAGCTGAGGATGGTAACTTCCACCTAGTTGCGGCTGATGCTAAGTTCCTTCAACTAGAGAGTATCGGTGCTACGATTTCCGAAGCTCAGGCGTATTGGGAGACAAACCGTGCTGAGTGTATTGCGATTGCTACTCGTAACCAACTCGCTATTGATAAGGCTCTTGGTAAAATAGACGAGCTCGGTAATCCGATACCTGACGATAATGATGTTCATGTATTCAACGTGGAACTACCTGAAGGGTACTTCCCTATTGAAGGTGATCTGATCATTCCTCCTCGTGCAGGTAAGTTCTTAGGTCGCGGAGCATATCGTCGATTCAAGTCTATCCCTAAAGTTGGCGGTGGTAACGTTCAAGGTGCGATTCTTGAATATCCGACGGCGTTTATGCCTATTGGTGGTAATGATAAGAATGGTATTCTCACCCAATGTGGTAGCTCACACGTAGGTCGATTTGCGATTATCGGTCACCTTAAAGATAATAGCGATGGAGGCAACGGCTTAATTACAGGCCATACCCCTCCAGTCCCAAATGCTGCTACATCGCAAGTTCCGACAAACTGGGCCGCATCGCTACCAAACTTGTTTACCCAAGATCGATTTGGTGAACCTGATACTGTGCGATTCGCAGTGGATGCTCAGAACCTTATTGCTCAACCTAATGGTGATGTTCATATTATTGCCCCATTTAAAGCCACATTCAACGGTCCTGATGACCTTGAAGGTTTATTGCGCGATGATAACATCGACATTCCGGTAGTACGATGGATACGCACATTTGATGCTGATGGTAAAGAGCTTGAACGTTGGTCTAATATCGGCTCCAATAACTTCGGTTGGTTAAACTATCCTGGAGCTCCAGGCGCCCATCAGGTTGAAGTTAAAGATTCAACTGGAGCTAAAGTTAAACCTGTCATGTGGGGAGCTTTGGATCTTGTTGGATCTAACGACGTTAGTCGGAATACAACAGGTAAACCAGCTAAAGATGATCTAGGCAACTTCATCGAAGTGGATCGCGCCTACCATCTACCAATATCGGATGGTGATACAACCACTACTGTAGTAATTCCTGGCGGGCTGCGTGACGAGCAAGTCTCACACCCAACAGACCCTACACTGAATGTAAGTGCAACCCCGTTTGATGTGGCTACTATTGAAGTGTCTTTCTACCATGTAGATCGTATACAAACGCTGTTGTCGCAATTGTTCCCATATCTCGGAGCTAGTTATTCGAGTTCTGCTCGATGTCAGTTCAATATATTTGAGAGTATCGTTATCGACTCTATGCCGTGGAACGGGTTTGTTGGTATCGATGGGGCATACAATAATCATACTTGTATCATGGCTCGCGAAAACGGGTTGGATGGTTTCTTCTTCCCAGGTGGGTATGAAGATTACATGCATAACTCGTTCGACAGTTGCGGTGCCGTTAACAATGGTGGGTGGGCACTATATCTACGTGAACCTTTCAGAGGCATCAGCGGTCTACCTAATCCAGAAGAGGGCTATTCATCTGGAAACGGTTGGCCTACAGGTAATGTTGGTGATGTTCCGGTAACTCTTGATCGATTCATCAGTCACAAGAAGTTGACGTATACGGCATCATTGAATGATTTCTCAAACTTCGACTGTTATGGCAACCGAGGTGGGGCATTATATATCGGTGCCGACTCCAATACCATCAATACTGGCGGATCGGAGCATCACTTCGATGCTCACAATATCGATCCTTTAGGTCGATATGATGATTGGGTAGATAGTCAAGGCGTAACAATGCCAGGTGTATATATAGACACGACTGACTACGAAAACGAGAAACGCGCTAAAGGCGATTGGAGTCCACTCCGATGGGCTGCATGTTATGTGTTTGCGGCGCAAGCTCGTCAAAATGATTTGACCATCACAGGCACACCCACAGATACTCGACGAGTGTTGTTCGGGGATTGGGTCAACAAGTATCAGAACCCTGCACCTCAACATGGTGCAAGTAACCGATACCGAGCTATTACGTGTAACCACTACGTACATCCACGTCAAGATAACTACGGTAGCTTGGTGGATGTACGATCTAAGTCGTATGCTAATATCTTCTTCACTCAATATGGTGAACATGAACATACCGGTGATATTCTATCTAACGGATCTGGTATACTGGAGATCGTAGGCAACTTCGCTAAGAAGGATGTGTTTGTCTTCCAACCATTCTTGTATCCAATTAGCCCACCGGATAACTTCGTCAATAACGATATGTTCATGGTGGTAACCAACAAACATCCCGACAGTCCATGTCCTGGTGGTAAGTTTAGCTTATCAGCTGATCGACTGGGTATTGTTGGCCAAACTGACATATCTACACTGTATGTCAATAGTGCTTTGGATAATTTGGCAGGTACCGTTCTTGCACCAGGCGAAAGCAAAGATGACACTATCATCGTTCCGACAATTGCTGGGTTTGATCCTGAGACTGACGATATTGATCAGATCACAGTAGACTTGACATACATCAGTGATGTGCAGGATACGCGTACAGCAGAAATGCTTCCACCGTATGTTCGACCGGTAGTTCAAGGGTTCAGACGATGGGTGAACGGTGCAGGTGATACTCGTATCACAATCTACTACTCGTGGGTTAATATGAGTACCACAGAAACGTATACTGCTGATCCTACAGATGAGAAGCATATGGTGGTTTATCGAATCACTGCTCACGAGCCGAACCGAGTGTTAGCGGGTATATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
9d739a49f83867d37fc425352bec756bb629e8125c9c8deda028d5eb7a944ab0
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,4403
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50