Protein

View in Explore
Genbank accession
WPJ67772.1 [GenBank]
Protein name
tail collar fiber protein
RBP type
TF
Evidence RBPdetect
Probability 0,88
Protein sequence
MSNNTYQHVSNESRYVKFDPTGTNFPEEITNVQAAIAAISPAGVNGVPDASSTTKGILFLATEQEVIDGTDNTKAVTPATLATRLSYPNATETVYGLTRYSTDEEAIAGANNESSITPAKFTVALNNAFETRVSTESSNGVIKISSLPQALAGADDTTAMTPLKTQQLAIKLIAQIAPSETAATESAQGVVQLATVAQVRQGTLREGYAISPYTFMNSTATEEYKGVIKLGTQSEVNSNNASVAVTGATLNGRGSTTSMRGVVKLTTTAGSQSGGDASSALAWNADVIHQRGGQTINGTLRINNTLTIASGGANITGTVNMTGGYIQGKRVVTQNEIDRTIPVGAIMMWAADSLPSDAWRFCHGGTVSASDCPLYASRIGTRYGGSSSNPGLPDMRGLFVRGSGRGSHLTNPNVNGNDQFGKPRLGVGCTGGYVGEVQKQQMSYHKHAGGFGEHDDAGAFGNTRRSNFVGTRKGLDWDNRSYFTNDGYEIDPASQRNSKYTLNRPELIGNETRPWNISLNYIIKVKE
Physico‐chemical
properties
protein length:527 AA
molecular weight: 55770,09300 Da
isoelectric point:6,68327
aromaticity:0,06641
hydropathy:-0,38558

Domains

Domains [InterPro]
DC_0176
STR
1–447
DC_0176
G3DSA:2.10.280.10
Unmapped
246–286
G3DSA:2.10.280.10 G3DSA:2.160.30.10 IPR037053 IPR044916
SSF69349
STR
246–326
SSF69349 SSF88874
IPR015173
STR
246–326
IPR015173 IPR011083 IPR027448
WPJ67772.1
1 527
Architecture
STR
ATT
STR
STR 1-329 | ATT 330-400 | STR 401-525 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage JoYop
[NCBI] 		3093947 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WPJ67772.1 [NCBI]
Genbank nucleotide accession
OR769032 [NCBI]
CDS location
range 163548 -> 165131
strand +
CDS
ATGAGTAATAATACATATCAACACGTTTCTAATGAATCTCGTTATGTAAAATTTGATCCAACCGGTACAAATTTTCCAGAAGAGATTACTAATGTTCAGGCTGCTATAGCAGCCATTTCTCCTGCTGGTGTAAATGGAGTTCCTGATGCATCGTCAACAACAAAGGGAATTTTATTTCTTGCCACTGAACAGGAAGTTATCGATGGAACCGATAATACCAAAGCAGTTACACCAGCAACGCTGGCAACAAGATTATCTTATCCAAACGCAACTGAAACTGTTTATGGATTAACACGATATTCAACTGACGAAGAAGCAATTGCTGGAGCTAATAATGAATCTTCTATAACTCCTGCTAAATTTACCGTCGCCCTTAATAATGCCTTTGAAACTCGTGTTTCAACTGAATCATCAAATGGAGTTATTAAAATTTCATCTTTACCGCAAGCATTAGCTGGCGCAGATGATACGACTGCAATGACTCCATTAAAAACTCAACAGTTAGCTATTAAACTAATTGCGCAAATTGCTCCTTCTGAAACTGCAGCTACCGAATCGGCCCAAGGCGTTGTTCAATTAGCAACAGTAGCGCAAGTTCGTCAAGGAACTTTAAGAGAAGGCTATGCGATTTCTCCTTATACGTTTATGAATTCTACTGCTACTGAAGAGTATAAAGGTGTAATTAAATTAGGAACACAGTCAGAAGTTAACTCGAATAATGCTTCAGTTGCAGTTACTGGCGCAACTCTTAATGGCCGTGGTTCTACAACGTCAATGAGAGGCGTAGTTAAATTAACTACAACTGCCGGTTCACAAAGCGGAGGTGATGCTTCATCAGCACTAGCTTGGAATGCTGACGTTATTCACCAAAGAGGTGGTCAAACGATTAATGGAACACTCCGCATTAATAATACGCTCACAATAGCTTCAGGTGGAGCAAATATTACCGGCACAGTTAATATGACTGGTGGTTATATTCAAGGTAAGCGTGTTGTAACGCAAAATGAAATTGATAGAACTATTCCTGTCGGAGCTATTATGATGTGGGCGGCCGATAGCCTTCCTAGTGATGCTTGGCGATTCTGTCATGGTGGAACTGTTTCAGCTTCAGATTGTCCATTATATGCTTCTAGAATTGGAACAAGATATGGCGGAAGTTCATCAAATCCCGGATTGCCTGACATGCGTGGTCTTTTTGTTCGTGGCTCTGGTCGTGGCTCTCACTTAACGAATCCAAATGTTAATGGTAATGACCAATTTGGTAAGCCTAGATTAGGTGTAGGTTGTACCGGTGGATATGTCGGTGAAGTACAAAAACAGCAGATGTCTTATCATAAACATGCGGGCGGGTTTGGCGAGCATGATGATGCAGGAGCATTCGGTAATACTCGTAGATCAAATTTTGTTGGTACACGTAAAGGACTTGACTGGGATAACCGTTCATACTTCACCAATGATGGATATGAAATTGACCCAGCATCACAACGAAATTCCAAATATACATTAAATCGTCCCGAATTAATTGGAAATGAAACACGTCCATGGAACATTTCTTTAAACTACATTATTAAGGTAAAAGAATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
2a0dee5bb70009d1797eff3d93a18611ec57f741c1af44ad7cae8dc89347126b
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6864
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence of Escherichia phage Carena and JoYop Addablah,A., Kakou Ngazoa,S., Adioumani,E., Gunathilake,D., Tremblay,D. and Moineau,S. 2024-03-12 — GenBank