Protein

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Genbank accession
XNY80058.1 [GenBank]
Protein name
tail spike protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MSTITQFPSGNTQYRIEFDYLARTFVVVTLVNSSNPTMNRVLEVGRDYRFLNPTMIEMLVDQSGFDIVRIHRQTGTDLVVDFRNGSVLTASDLTNSELQAIHIAEEGRDQTVDLAKEYADAAGSSAGNAKDSADEARRIAESIRIAGLIGYITRRSFEKGFNVTTWSEVLLWEADGSYYRWDGTLPKNVPAGSTPDSTGGVKLGAWVNVGDAALRSQISNPDGATLYPELQRARWRDVGDIRGWNLRGDGSDEAVLLQQVINTGNVFIPKGMIISHSTVTIPKGTQIKLADGAALRSLVKDALSFEKDEMFKLASSAASGTTTLTLASAPTYTNFDKVMITRSEDTSDSWYIANAQNPDQLGYQGEVFRVLSIDGATITLASPVPWELTVANAEVRIIKGPTTKITGGNLINGATGSNYMYQSKGASLIEFEGTSFDYNGNGGSRHDTSYGIKYSGTRHKNRVGNGNVFLGYGSVECTIEGTEQNGGAGGDAQIIVYAGCRNIVSKGNKCFPVASEAGVYIGAKCIGGASVSDHIKGGKYGFISAFGVQKFSVDKPVLLDQLKAAIFAEQCQNFEVESPVIRFIKTGQQTVAAILLKDSDSYVIDCNIPIDTGDDGYIVSSYSSPAYNTVARKGISLRASGKGSINLSSAMVNFSLVGCEVTGDITLYNGDIGSSDGFISNNRCRYMVLHSLQKSEITDTTITGNQNGYGIRLSGNSRWNNIRRSKISGVTTAFFVNPAPANIYTNALHEDNMIDYSTVTTFVSSPTGTTTPATGLLNPAPVRNFFLPSTGWQDAPTTKRTISGWRHKGTNTGVATDWFTIAINEA
Physico‐chemical
properties
protein length:826 AA
molecular weight: 88983,42900 Da
isoelectric point:5,76355
aromaticity:0,08717
hydropathy:-0,21889

Domains

Domains [InterPro]
DC_0369
STR
1–824
DC_0369
IPR005604
ATT
10–113
IPR005604 G3DSA:2.10.10.80 IPR011050
IPR040775
RBD
155–211
IPR040775
XNY80058.1
1 826
Architecture
ATT
STR
ATT
STR
ATT 1-113 | STR 114-149 | ATT 150-220 | STR 221-824 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XNY80058.1
1 826
Domain Start End Length (AA) Confidence
N-terminal 1 254 254 0,9974
Central domain 255 761 508 0,9931
C-terminal 762 826 64 0,9460
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-254
Central
255-761
C-terminal
762-826

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage SD6
[NCBI] 		3397182 No lineage information
Host Escherichia sp.
[NCBI] 		1884818 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XNY80058.1 [NCBI]
Genbank nucleotide accession
PQ821641.1 [NCBI]
CDS location
range 34201 -> 36681
strand +
CDS
ATGTCCACGATTACACAATTCCCTTCAGGAAACACTCAGTACAGGATTGAGTTCGACTACCTAGCCAGAACGTTTGTTGTTGTTACGCTGGTGAATAGCTCTAACCCTACCATGAACCGTGTACTTGAAGTGGGTCGAGATTACCGATTCCTTAATCCAACGATGATTGAGATGTTGGTTGACCAATCGGGTTTCGACATCGTTCGTATTCACCGTCAGACTGGAACTGACTTAGTGGTAGACTTCAGGAATGGCTCAGTGTTGACAGCTAGTGACCTGACCAATTCAGAGCTTCAGGCTATCCATATTGCAGAAGAAGGTCGAGACCAAACTGTTGACTTAGCGAAGGAATATGCAGATGCTGCTGGTAGCTCTGCTGGCAACGCTAAGGATAGCGCGGACGAAGCACGACGAATCGCTGAGAGTATCAGGATCGCCGGTCTAATTGGCTATATTACCCGTCGCTCCTTCGAGAAAGGCTTCAACGTTACAACATGGAGCGAGGTCCTGCTGTGGGAAGCGGATGGTAGCTATTACCGCTGGGATGGTACACTTCCAAAGAATGTTCCTGCGGGTTCAACTCCAGATAGCACTGGTGGGGTTAAATTAGGTGCGTGGGTTAATGTTGGAGATGCCGCATTACGATCACAAATATCAAATCCTGACGGGGCTACTTTATATCCAGAATTACAAAGGGCCAGATGGCGTGATGTAGGTGATATACGAGGTTGGAACCTGAGGGGCGATGGCTCTGATGAAGCCGTTTTACTACAGCAAGTAATCAATACTGGAAATGTATTCATACCTAAAGGAATGATTATAAGCCACTCAACTGTAACAATTCCAAAGGGTACACAAATAAAACTTGCAGATGGAGCTGCTCTCAGGTCTTTGGTAAAAGATGCGCTTTCATTTGAAAAAGATGAAATGTTCAAATTGGCTTCCTCGGCGGCATCTGGAACCACAACCTTGACACTGGCATCAGCCCCAACTTACACAAATTTTGACAAAGTAATGATTACGAGGTCGGAAGACACCAGTGACAGTTGGTATATCGCGAATGCCCAAAATCCAGACCAGTTAGGATACCAAGGTGAGGTTTTCCGCGTTCTGAGCATAGATGGAGCAACTATAACGTTGGCATCCCCAGTGCCATGGGAGCTAACAGTGGCGAATGCAGAGGTTCGAATTATTAAAGGACCAACAACAAAAATAACCGGAGGAAATCTAATAAACGGGGCGACTGGCTCAAACTATATGTATCAGTCAAAAGGCGCCTCATTGATTGAGTTTGAGGGTACTTCCTTCGATTACAACGGCAATGGTGGCAGTCGCCATGACACCTCCTACGGCATCAAATATTCTGGTACTCGACACAAAAATAGGGTCGGTAACGGGAACGTATTTCTTGGGTATGGGTCAGTAGAGTGTACTATTGAAGGAACAGAGCAGAATGGTGGTGCAGGTGGAGATGCTCAGATCATTGTTTACGCTGGATGTAGAAACATAGTTTCTAAAGGTAATAAATGCTTCCCTGTCGCATCAGAAGCCGGAGTTTACATTGGTGCGAAGTGCATAGGCGGGGCTTCCGTTTCAGACCATATTAAAGGCGGTAAATACGGGTTTATTTCAGCATTCGGCGTACAAAAATTTTCCGTCGATAAACCGGTGTTACTCGACCAGTTGAAAGCCGCTATATTCGCTGAGCAATGTCAAAATTTTGAGGTTGAATCGCCTGTAATCCGTTTTATTAAAACAGGACAACAGACTGTAGCGGCTATCCTGCTCAAAGATTCAGATTCTTACGTTATTGACTGTAATATTCCTATCGATACCGGGGATGACGGCTACATCGTTAGCTCATATAGTTCGCCAGCGTATAACACTGTAGCAAGGAAAGGCATAAGCCTGAGAGCTTCAGGGAAAGGAAGTATTAACCTAAGCTCAGCGATGGTTAATTTCTCGTTAGTTGGCTGTGAAGTTACCGGGGATATAACGCTGTACAACGGGGATATAGGTTCGTCCGACGGCTTTATTAGTAATAATCGATGCCGATATATGGTTCTGCACTCACTTCAGAAGAGTGAGATTACTGATACGACAATTACAGGAAACCAAAATGGATATGGAATACGACTGAGCGGGAACTCTAGATGGAACAATATCAGACGCAGCAAAATCAGTGGTGTAACCACAGCGTTCTTTGTTAACCCAGCACCCGCAAATATATACACGAATGCGCTTCATGAGGATAACATGATAGATTACTCAACAGTAACCACATTCGTATCATCGCCGACTGGAACAACCACTCCAGCGACGGGCTTGTTAAACCCTGCACCGGTGAGGAACTTTTTTCTACCATCTACAGGTTGGCAAGATGCACCCACAACCAAGCGAACGATTAGCGGCTGGAGGCATAAAGGCACAAATACCGGTGTGGCGACTGATTGGTTTACTATAGCTATCAATGAAGCATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
ae3696ff1065b91b095c826eba96b81682431fea17353ac0ad7cddc7c3a46444
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7982
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50