Protein

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Genbank accession
AZF88574.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MSLKVVDPIEVTDAVLTASDIPEPDTARGEVEYINGAFTGIVLSNGAINTIIDVSFDGNIYALDGFDFYSSGTSYVREYNDEGVSTGNSFLTSALAKCIEVYNNQIYAGTSGGFVFKYDKAGTQLDVYDLTATISSCVGICFAGSRFYILDQIKGKVFSFDLSFTDPKEVKDFGKTYPDNFGLSFINGSIHYVSQTSAKIKSFSTNGNDIGEFSITNERPDYSYFGGLYYDGVDILTVNNKLDKAYRYRNGVLTQPYNPGDKVVISSAHTKYQCLKATSQSPIDGTTDDATATWIEVGPTNKWAMFDNLQNTKTLSDSDFTVTLNPVAYVNTLAVFGFSGVTSIRIEVDDSGGSNIYDKTFTASDFSAIYDHYTYVFYQIVALEKLIAEDLPPLPNTTIRVTFTGSNMQIGEVVHGFAINAGTLVAEGTKSDRFRYREQQYNEFGYPVGAAPIVVELNTYDVLVPKLNNPAIQKLLDKVTDKNTLWVGDIGGGQRLITYGFFERSPIPFTMPNDINYQITVRASV
Physico‐chemical
properties
protein length:525 AA
molecular weight: 57728,72340 Da
isoelectric point:4,57244
aromaticity:0,12762
hydropathy:-0,13848

Domains

Domains [InterPro]
DC_2002
ATT
1–50
DC_2002 SSF63825
SSF63825
STR
47–220
SSF63825
DC_1523
STR
184–525
DC_1523
AZF88574.1
1 525
Architecture
ATT
STR
ATT 1-50 | STR 51-525
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AZF88574.1
1 525
Domain Start End Length (AA) Confidence
N-terminal 1 48 48 0,9703
Central domain 49 247 200 0,2557
C-terminal 248 525 277 0,2293
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-48
Central
49-247
C-terminal
248-525

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage P23
[NCBI] 		2488664 No lineage information
Host Vibrio sagamiensis
[NCBI] 		512650 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AZF88574.1 [NCBI]
Genbank nucleotide accession
MK097141 [NCBI]
CDS location
range 5693 -> 7270
strand -
CDS
ATGAGTCTAAAAGTAGTTGACCCAATTGAAGTGACGGATGCGGTATTGACCGCGTCCGATATTCCAGAGCCGGACACAGCAAGGGGCGAAGTTGAATACATTAATGGCGCATTTACAGGTATAGTTTTATCTAATGGCGCAATAAACACAATTATAGATGTGTCATTTGACGGAAATATATATGCTTTGGATGGTTTTGACTTTTATTCAAGCGGCACTTCCTATGTCCGAGAGTATAATGACGAAGGAGTTTCAACTGGAAACTCATTTCTCACTAGCGCACTAGCTAAGTGTATTGAGGTTTATAACAATCAGATATATGCAGGCACTAGCGGCGGCTTTGTATTTAAGTACGACAAGGCAGGAACGCAACTTGACGTTTACGACCTAACTGCAACAATCTCTTCATGTGTTGGAATTTGCTTTGCTGGCTCAAGATTTTATATCTTAGATCAAATTAAAGGTAAGGTATTTTCTTTTGACCTGTCATTCACAGACCCTAAAGAGGTTAAGGATTTCGGTAAGACTTATCCTGACAATTTTGGGCTTTCATTTATCAATGGTTCAATACATTACGTTTCGCAAACTAGTGCAAAAATAAAATCATTCTCCACAAATGGCAACGACATTGGTGAGTTTTCAATAACAAATGAAAGGCCTGATTATAGTTACTTTGGTGGCCTGTACTATGATGGGGTTGATATTCTCACAGTTAACAACAAACTCGATAAAGCTTACAGATACCGTAATGGAGTATTGACTCAGCCTTACAACCCTGGCGACAAAGTTGTAATCTCCAGCGCGCACACCAAATATCAATGTCTAAAAGCCACATCACAAAGCCCTATCGATGGGACAACAGATGACGCAACCGCAACATGGATTGAAGTCGGTCCAACAAATAAGTGGGCGATGTTTGATAACCTACAAAACACAAAGACACTAAGCGATAGCGACTTTACGGTAACATTAAACCCTGTTGCCTACGTAAACACATTGGCGGTGTTTGGGTTTTCTGGTGTCACATCAATCAGAATAGAAGTTGATGATAGTGGCGGTTCAAATATTTACGACAAGACCTTTACCGCGTCTGACTTCTCCGCAATTTACGACCATTACACTTATGTTTTTTATCAAATAGTTGCACTTGAAAAGCTAATAGCAGAAGATTTGCCACCACTACCTAATACCACCATTAGGGTTACGTTTACTGGCTCAAATATGCAAATCGGTGAGGTCGTTCATGGCTTTGCAATTAACGCTGGGACGCTAGTAGCGGAAGGGACCAAGTCAGACCGATTCAGATATCGTGAGCAACAATATAACGAGTTTGGTTATCCGGTTGGTGCGGCGCCTATTGTTGTGGAGTTAAATACTTACGATGTGCTAGTGCCAAAACTTAATAATCCTGCAATTCAAAAGCTGTTAGATAAAGTAACGGATAAAAATACGCTTTGGGTTGGCGATATAGGTGGAGGTCAAAGATTGATAACTTACGGATTCTTTGAGCGTAGCCCCATACCTTTCACAATGCCTAACGACATTAACTATCAAATCACTGTGCGCGCATCTGTGTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
c4a09497d47df921e6597d757f3c80ec18f637854d4ba6d880a139670868d0ed
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8723
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete Genomic Sequence of Bacteriophage P23: A Novel Vibrio sagamiensis Phage Isolated from Yellow Sea, China Liu,Y. 2019-08-16 — GenBank