Protein

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Genbank accession
AGZ17278.1 [GenBank]
Protein name
tail tubular protein B
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,66
Protein sequence
MAQALEGSVPSLLQGVSQQVPRERLQGQVTAMVNCLADPVSGVRRRPIARLISTVEWNVPEASTTQSLYTQYLEDGEGGMHLCIDTSTGRWWLLDDDLKTEISSGTEKYLLSPVEGRHSIQTTSIGGTTYILNTHQKPEAVKDTSGTIDPSTAGWFFVKSGAFSKRYSVTVASGNNRYEVFYETPKGTDTGDAEKTTPEYISTEIEKKLKEKGLTVYRDGTYLFFSGLENAQVESDAGSTYVGVSGRGRVQVESDLPARLPTQADGYLCSVGMRSTALVWYKFNLADRKWDEAGAYGSVTGIKNMPLELKLDGSMSAPVYEGRLAGDEHTNDDPTFLKDKLITGMSTFQGRLVLLSGAYVCMSKSGTPHRFYRGTVTQLLDADRIDIASGSAQNSVFRSAVQFNRDLIILGDSMQAVVPTGSSLLSPNNASLVLTSELSCDSRVGAVPAGQTMLYFSRRTQNYAGALELIPSQYAGSQYISQDATVHIPKYMAGRVYSASTSTVGNMVVMGCTNNLDSLIVYEYQWGADEKLQSAWHTWQFSLNILGFHFAREKLVLFIDFGTTVGICTVDPREGYKSTEFTLDPLIDYPVPVTVKDGHFSIPQHLQHVHTKGYDLVLARAGSSPDYGAEVGIEEVLAGTGTVTRGVPDGEYTLGCRYRSVLAPTPPMLRDENNKVIGAGSVRLLRYNVTLQHSSEFSVHVVDTSRDVDHSGLYTGMLLNSPELSPDKPLLYTLGSVIVPCRTNADTTEMYLVSSSTREMNVLDISYILKYNMRRRRV
Physico‐chemical
properties
protein length:778 AA
molecular weight: 85361,19830 Da
isoelectric point:5,62754
aromaticity:0,08612
hydropathy:-0,24460

Domains

Domains [InterPro]
DC_0058
STR
1–778
DC_0058
IPR058003
TTP
4–778
IPR058003
AGZ17278.1
1 778
Architecture
STR
STR 1-778
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AGZ17278.1
1 778
Domain Start End Length (AA) Confidence
N-terminal 1 148 148 0,9919
Central domain 149 347 200 0,1159
C-terminal 348 778 430 0,1844
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-148
Central
149-347
C-terminal
348-778

Taxonomy

  Name Taxonomy ID Lineage
Phage Proteus phage PM16
[NCBI] 		1357704 Uroviricota > Caudoviricetes > Autographivirales > Slopekvirinae > Novosibovirus
Host Proteus mirabilis
[NCBI] 		584 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AGZ17278.1 [NCBI]
Genbank nucleotide accession
KF319020 [NCBI]
CDS location
range 24233 -> 26569
strand +
CDS
ATGGCACAAGCACTAGAAGGGTCTGTACCCTCCCTATTACAAGGGGTATCTCAACAAGTCCCTAGGGAGCGATTACAGGGACAAGTTACTGCTATGGTTAACTGTCTAGCTGACCCTGTTTCTGGTGTTCGTAGACGTCCTATAGCCCGTTTAATCAGTACAGTTGAATGGAATGTTCCGGAGGCTAGTACAACCCAATCTTTGTACACACAGTACTTAGAAGATGGTGAAGGCGGTATGCACCTTTGTATCGACACCAGCACAGGGCGTTGGTGGTTACTAGATGATGACCTAAAGACTGAGATTAGTTCAGGTACAGAGAAGTACTTACTTAGTCCAGTAGAAGGTAGACACAGTATTCAGACTACTAGTATAGGTGGTACAACGTACATACTGAATACTCACCAGAAACCAGAAGCTGTTAAAGATACTTCAGGTACAATAGACCCTAGTACTGCTGGTTGGTTCTTTGTCAAATCAGGGGCTTTCAGTAAGCGGTACAGTGTTACAGTAGCTTCTGGTAATAATCGTTATGAAGTGTTCTATGAGACTCCTAAAGGTACTGATACAGGTGACGCTGAGAAGACTACTCCTGAGTACATCAGTACAGAGATAGAGAAGAAACTGAAAGAGAAAGGTTTAACTGTGTACCGTGATGGTACGTACCTGTTCTTCTCTGGTTTAGAGAACGCTCAAGTAGAGTCTGATGCTGGTAGTACTTACGTAGGCGTATCTGGTAGGGGTAGAGTTCAAGTTGAATCTGACTTGCCAGCACGTCTCCCTACACAAGCTGATGGGTACTTATGCTCAGTGGGTATGCGTAGCACTGCTCTTGTGTGGTACAAGTTCAACCTAGCTGATAGGAAGTGGGATGAAGCTGGGGCGTACGGTTCAGTTACTGGTATTAAGAACATGCCCCTAGAGTTAAAGCTAGATGGTAGTATGAGTGCCCCTGTGTATGAGGGTAGATTAGCTGGTGATGAACACACTAATGATGACCCTACATTCCTAAAGGATAAACTCATTACTGGTATGAGTACATTCCAAGGTAGGTTAGTACTCCTATCTGGTGCTTATGTGTGTATGAGTAAATCAGGTACACCTCATAGGTTCTACAGAGGTACAGTAACTCAATTACTGGATGCTGATAGAATTGATATTGCCTCGGGTTCAGCACAGAACAGTGTATTCAGAAGTGCTGTACAGTTCAATAGGGATTTAATTATCCTAGGTGATTCTATGCAGGCTGTTGTGCCTACAGGTAGTTCTTTACTTAGCCCTAACAATGCTAGTCTAGTACTAACCTCTGAGTTATCATGTGACTCAAGGGTAGGTGCTGTCCCAGCCGGACAAACCATGTTGTACTTTAGTAGACGTACACAGAATTATGCTGGTGCCTTAGAGTTAATCCCATCACAGTACGCTGGCTCACAGTACATCTCCCAAGATGCTACAGTGCATATCCCTAAGTACATGGCTGGTAGGGTGTACTCTGCTAGTACCAGTACAGTGGGTAATATGGTAGTTATGGGTTGTACTAATAACCTAGACTCATTGATTGTGTATGAGTACCAATGGGGTGCTGATGAGAAGCTACAAAGTGCATGGCACACTTGGCAGTTCTCTCTGAATATCCTAGGCTTTCACTTTGCTAGGGAGAAGTTAGTACTGTTCATTGACTTTGGTACAACTGTAGGTATCTGCACAGTAGACCCAAGAGAGGGATACAAGAGTACTGAGTTTACACTAGACCCTTTAATTGATTACCCTGTACCTGTTACAGTAAAAGATGGTCATTTCAGTATCCCCCAGCATTTACAGCATGTACATACCAAAGGTTATGACTTAGTTCTAGCAAGAGCTGGATCTAGTCCTGATTATGGTGCTGAGGTTGGTATTGAGGAGGTACTAGCTGGTACTGGTACAGTTACTAGAGGTGTTCCAGATGGAGAGTACACCCTAGGTTGTAGATACCGTTCTGTACTAGCACCTACTCCTCCTATGCTAAGAGATGAGAACAACAAAGTTATTGGTGCTGGTTCAGTTAGGTTGTTACGGTACAATGTAACATTACAACACAGCTCAGAGTTCAGTGTGCACGTAGTAGATACCAGTAGAGATGTAGACCATTCTGGTCTGTACACTGGAATGCTATTGAACAGCCCTGAGTTATCCCCAGATAAACCTTTACTGTACACACTAGGAAGTGTTATTGTACCTTGTAGAACTAATGCTGATACCACTGAGATGTACTTAGTAAGTTCAAGTACAAGGGAAATGAATGTCCTAGATATTTCATACATTCTCAAGTACAACATGCGGAGAAGGAGAGTTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
50f72a1254ee1eec8f8bb87420a6e013dc497c86a4dc4fc080e78a69d07de7ac
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8977
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Lytic bacteriophage PM16 specific for Proteus mirabilis: a novel member of the genus Phikmvvirus Morozova,V., Kozlova,Y., Shedko,E., Kurilshikov,A., Babkin,I., Tupikin,A., Yunusova,A., Chernonosov,A., Baykov,I., capital KA, Cyrillicondratov,I., Kabilov,M., Ryabchikova,E., Vlassov,V. and Tikunova,N. 2016 27350061 GenBank