Protein

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Genbank accession
BDR25738.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence RBPdetect2
Probability 0,54
Protein sequence
MLKIKGSPSVGKISATINRPFLTKTLVTTMPQNIANFTAGYGGGMLHIFGGEAVPSVGQIQIYRRYNIATNTWLSPSGNIGAWAWGGGGYYNGSFWALCGSNNGYNTSYFQINPSTATGTRYTDMAGGSRGQGRTASVDNLNVFVIGGIGQNNITNALCYRFNASTRAWTVRTSMPSPRNGHTIGSYNGKIYVLGGWNETSNNLSDVLEYNISTNTWTTLPTTIPGAPSSWFGGFVYKQYAVYGASSSSNTLLFKILDLNKMTWEILDTGLPRRWSAEYVVTETGVYMIGGSSSYPGAANYFTAPRYNEIYFFKG
Physico‐chemical
properties
protein length:315 AA
molecular weight: 34225,95420 Da
isoelectric point:9,51723
aromaticity:0,13968
hydropathy:-0,21206

Domains

Domains [InterPro]
IPR015915
STR
24–130
IPR015915 PF24681
IPR015915
STR
25–130
IPR015915 PTHR46344
IPR015915
STR
93–296
IPR015915
IPR015915
STR
103–314
IPR015915
IPR006652
STR
142–189
IPR006652 IPR006652
BDR25738.1
1 315
Architecture
STR
STR 24-314 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
BDR25738.1
1 315
Domain Start End Length (AA) Confidence
N-terminal 1 47 47 0,0990
Central domain 48 251 205 0,5362
C-terminal 252 315 63 0,5733
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-47
Central
48-251
C-terminal
252-315

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage sp. 30-2
[NCBI] 		2972142 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Pseudomonas aeruginosa
[NCBI] 		287 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Pseudomonadales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
BDR25738.1 [NCBI]
Genbank nucleotide accession
LC727697 [NCBI]
CDS location
range 101290 -> 102237
strand -
CDS
ATGTTGAAAATAAAAGGAAGTCCATCCGTAGGCAAAATATCAGCAACAATTAATAGACCGTTTTTAACTAAAACCTTAGTTACTACGATGCCACAAAACATTGCAAATTTTACTGCAGGATATGGTGGCGGAATGTTGCATATATTCGGGGGCGAAGCTGTTCCTAGTGTAGGCCAAATACAAATATATAGACGATACAATATAGCAACTAATACTTGGTTAAGTCCTAGCGGAAACATAGGAGCCTGGGCATGGGGAGGAGGCGGCTATTACAATGGAAGTTTTTGGGCGCTGTGTGGTTCTAACAATGGATATAATACTTCGTATTTTCAGATAAACCCTTCCACTGCAACAGGTACACGATATACAGATATGGCCGGCGGTTCTAGAGGACAAGGAAGAACCGCATCAGTAGATAATCTAAACGTATTTGTTATAGGAGGTATTGGGCAAAATAATATAACAAATGCATTGTGTTATAGATTTAATGCTAGTACAAGAGCATGGACAGTAAGAACAAGTATGCCATCGCCAAGAAATGGTCATACCATAGGATCGTATAACGGGAAAATATATGTACTAGGTGGCTGGAACGAAACATCAAACAATCTTTCAGACGTTCTAGAATACAACATATCTACTAATACGTGGACAACTTTACCTACTACAATTCCGGGAGCACCTTCTAGCTGGTTCGGCGGGTTTGTATATAAACAATATGCTGTATACGGCGCGTCATCTTCTTCTAATACGCTTTTATTTAAAATATTAGATTTAAATAAAATGACATGGGAAATTTTAGATACCGGGTTGCCTCGCCGCTGGTCTGCAGAATATGTAGTTACAGAAACCGGTGTATATATGATAGGCGGTAGTAGTTCTTATCCTGGCGCTGCCAACTATTTTACTGCCCCCAGATATAACGAAATATATTTCTTTAAAGGTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
e7228ddef40bb12d2603caf20a1c6a7bdad33301bae37fb4a710ce90c562c242
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,9129
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Whole-Genome Sequence of Pseudomonas phage 30-2 Fujiki,J., Nakamura,T., Nakamura,K., Tamamura,K., Ichikawa,N., Ishiguro,Y. and Iwano,H. 2021-07 — GenBank