Protein

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Genbank accession
YP_009148844.1 [GenBank]
Protein name
tail protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,69
Protein sequence
MYPIPCLFLTLSGGGTEPLPPGSVKKVAFTRGLVGGATKRSMAILLIDGRLYTQGDNAWSECANGNISPFKDHWHLAANGVADVFGGGRAFVVKYNNGGWQYCGDTSQFTGSGSIYSSWTSFPSSITGTVSLANLQSVSCALGNTLWQMVDGRLYGSGSNTNGCLGSGNTTVISIPRSISASSVRAYSLNACVTYLNNIGLPRVCGATHQIDGTSTTQTQNFIDVSFASVTETVYVKEWLANETNSMAIASTGVDDTEHYLYTRGIGTAQYSKKEGIGPFETFRVIDGGQSHFLIADNKLYGLGDLSAQLGLGTPSTMVLEPTLVPVPTGRDWDLSKLTYIVDMKTDVLNQGNSISHWMVYDGNLYYAGNLYGFFGSTDSTGEFTNIPEASFGGTTADAITTGSIPYAIKGSRSQLTWTVEPADAEIYDISFTSSAPNIATVDSNGIMTFLEEGGFDITMTAKTGSGADAKTLTDTSGGYVSIFSVTTDSIPQKEVGDVFVFMDKNSPDYTPGPNVVGMEISPANVDTNFIDGELTTTNPDVVMIDEGGFLSCIAVGDARCGVRLIYREGQVEAFDDSYVSVSDFTAPPDPVDPGEPVVPSQPQ
Physico‐chemical
properties
protein length:604 AA
molecular weight: 64057,50670 Da
isoelectric point:4,36827
aromaticity:0,09768
hydropathy:-0,08129

Domains

Domains [InterPro]
IPR009091
STR
37–402
IPR009091 G3DSA:2.60.40.1080
IPR009091
STR
41–376
IPR009091 IPR008964 DC_1711
DC_0918
STR
77–202
DC_0918 DC_0179
IPR000408
STR
151–183
IPR000408 IPR003343
YP_009148844.1
1 604
Architecture
STR
RBD
STR 37-500 | RBD 501-601 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009148844.1
1 604
Domain Start End Length (AA) Confidence
N-terminal 1 86 86 0,0793
Central domain 87 346 261 0,7614
C-terminal 347 604 257 0,1336
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-86
Central
87-346
C-terminal
347-604

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage SSE121
[NCBI] 		1204529 Uroviricota > Caudoviricetes > Vequintavirinae > Seunavirus SSE121 >
Host Salmonella
[NCBI] 		590 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009148844.1 [NCBI]
Genbank nucleotide accession
NC_027351 [NCBI]
CDS location
range 41452 -> 43266
strand +
CDS
ATGTATCCTATTCCATGTCTCTTCTTGACATTATCTGGAGGAGGAACAGAACCACTACCACCAGGTAGTGTTAAGAAGGTGGCCTTTACCCGTGGTCTGGTTGGTGGTGCTACCAAAAGGTCAATGGCGATCCTCCTGATTGATGGGAGACTCTATACCCAAGGGGATAATGCGTGGTCTGAATGCGCAAACGGGAACATAAGCCCGTTTAAGGATCATTGGCACTTGGCGGCTAATGGTGTAGCTGATGTTTTTGGTGGTGGTAGAGCCTTTGTTGTCAAATACAACAATGGTGGCTGGCAGTATTGTGGGGACACCAGTCAATTCACTGGTAGTGGGTCTATCTATTCTTCTTGGACAAGCTTCCCTTCATCAATCACAGGCACAGTATCCCTCGCAAATTTACAAAGTGTTTCTTGTGCTCTCGGTAACACACTCTGGCAGATGGTAGATGGAAGACTTTATGGAAGCGGGTCAAACACAAATGGATGCCTTGGCTCTGGTAATACTACCGTAATATCGATCCCAAGAAGTATTAGTGCATCCTCTGTGAGAGCTTACAGCTTAAATGCTTGCGTGACATACCTGAACAATATTGGACTTCCCCGTGTTTGTGGGGCCACCCATCAGATAGATGGTACTTCAACAACACAAACACAAAACTTTATCGATGTTAGTTTTGCCTCTGTGACTGAAACCGTCTATGTTAAAGAGTGGTTAGCGAACGAAACAAACTCAATGGCTATCGCCTCTACAGGTGTTGATGATACAGAGCATTATTTATATACGAGGGGTATCGGGACAGCCCAATACTCTAAGAAAGAGGGTATTGGTCCTTTCGAGACATTCAGGGTTATCGACGGTGGTCAGTCTCATTTCCTGATTGCTGATAACAAGCTTTACGGTCTTGGTGACCTAAGTGCTCAACTTGGCCTTGGCACACCATCAACAATGGTGTTAGAACCGACCCTTGTTCCAGTTCCTACAGGAAGGGATTGGGATCTTTCGAAGCTGACATACATTGTAGACATGAAGACAGATGTCCTTAACCAGGGGAACTCTATCAGCCATTGGATGGTGTATGACGGGAACCTTTACTACGCTGGTAACCTTTATGGTTTCTTTGGGTCAACCGATAGCACTGGTGAGTTCACAAACATCCCAGAAGCATCCTTTGGGGGGACAACTGCGGATGCTATCACCACAGGGTCTATCCCATACGCTATCAAAGGGTCGAGAAGTCAACTTACGTGGACTGTTGAGCCAGCAGATGCTGAGATTTATGATATTTCGTTCACATCGAGTGCTCCTAATATCGCAACTGTAGACTCAAATGGTATCATGACCTTCCTTGAAGAGGGTGGTTTTGACATCACAATGACTGCTAAAACAGGGTCTGGCGCGGATGCTAAAACACTCACAGATACTTCTGGCGGTTATGTTTCCATCTTCTCTGTGACTACCGATTCCATCCCACAAAAGGAAGTTGGTGATGTGTTCGTGTTCATGGATAAAAACAGTCCTGACTATACACCAGGTCCGAACGTTGTCGGAATGGAAATTTCTCCAGCCAATGTTGATACTAACTTCATAGACGGAGAATTAACAACTACAAATCCGGATGTGGTGATGATTGATGAGGGTGGATTCCTTTCCTGTATTGCAGTTGGTGATGCCCGTTGTGGTGTTCGTCTTATTTACAGGGAGGGTCAGGTTGAGGCATTTGATGATTCGTATGTCAGTGTTTCAGACTTCACAGCCCCACCAGATCCTGTGGACCCCGGCGAACCAGTTGTACCTTCTCAACCGCAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
e670d188c718777041af9f817ec5dd156aada8ad1c24f8edeae834c6a8839469
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8323
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Bacteriophages quickly and effectively reduce contamination of various foods with Salmonella Woolston,J., Parks,A.R., Hanna,L.F., Charbonneau,D. and Sulakvelidze,A. 2016-07-02 — GenBank