Protein

View in Explore
Genbank accession
AXG66494.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TF
Evidence RBPdetect
Probability 0,90
TF
Evidence RBPdetect2
Probability 0,60
Protein sequence
MGLVQVDPALIDPKGGTVNQVLAKVSETQVGFRDENKDDPSADLSNVSFDSQTGTLTIIFQDGTQKSVSGLPTADQMKAGKEGKQGKQGIQGNNGKDGKDGRDGEPGCPGIRGTRGRQGPTGNTGPIGPTGETGPVGPTGAIGPTGPAGRDAIINQYEVSPVLDPLTGNEIVGAFVGSDFDPNTGRTTNFGRAIAPASQSAINVAFNKPFLNRCASLTITFLNAATNQAKTYSIYNTDGTAVKENVLLGGFMLKSTGANTVGWDFYYSAIGD
Physico‐chemical
properties
protein length:272 AA
molecular weight: 28044,71090 Da
isoelectric point:4,99049
aromaticity:0,06250
hydropathy:-0,41691

Domains

Domains [InterPro]
DC_0479
ATT
3–79
DC_0479 IPR008160 DC_0380
PTHR24637
Unmapped
77–151
PTHR24637
AXG66494.1
1 272
Architecture
ATT
STR
RBD
ATT 3-79 | STR 98-151 | RBD 152-272
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Dickeya phage vB_DsoM_JA13
[NCBI] 		2283030 Uroviricota > Caudoviricetes > Salmondvirus >
Host Dickeya solani MK10
[NCBI] 		1224151 Pseudomonadota > Gammaproteobacteria > Enterobacterales > Pectobacteriaceae > Dickeya > Dickeya solani

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AXG66494.1 [NCBI]
Genbank nucleotide accession
MH460460.1 [NCBI]
CDS location
range 57188 -> 58006
strand -
CDS
ATGGGATTGGTACAAGTAGATCCCGCTCTAATTGATCCGAAGGGCGGTACAGTCAATCAGGTTCTTGCGAAAGTTTCGGAAACTCAGGTTGGCTTTCGCGATGAAAACAAAGACGATCCTAGCGCAGATTTGTCGAACGTTTCTTTTGATAGTCAAACGGGAACGTTAACGATTATTTTTCAGGACGGCACGCAGAAATCTGTTTCTGGTTTACCTACTGCTGATCAGATGAAAGCAGGAAAGGAAGGGAAACAAGGTAAGCAAGGCATTCAGGGAAATAACGGCAAAGACGGCAAAGATGGTCGCGATGGTGAACCGGGTTGTCCGGGAATTCGCGGAACGAGAGGACGACAAGGGCCAACTGGAAACACTGGCCCGATTGGCCCAACTGGCGAAACTGGTCCGGTTGGTCCGACTGGTGCAATTGGCCCAACTGGTCCTGCTGGTCGTGATGCAATTATAAATCAATACGAAGTTTCTCCAGTTTTAGATCCGTTAACCGGAAATGAAATTGTTGGTGCGTTTGTTGGAAGTGATTTTGATCCTAACACTGGACGCACAACAAACTTCGGTCGTGCTATTGCTCCTGCGTCTCAAAGCGCTATCAACGTTGCATTCAACAAACCTTTCTTGAACCGTTGTGCATCACTAACAATTACGTTCTTGAATGCTGCAACGAATCAGGCAAAAACTTATTCCATCTACAACACTGATGGCACGGCAGTTAAAGAGAACGTTCTGCTTGGTGGCTTCATGCTCAAGTCCACTGGTGCGAATACTGTAGGTTGGGATTTCTACTATTCCGCAATAGGGGATTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
af417137b2d89cd88dc793aea4fd58c5a97d93a5a32569daafde229e798c611a
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7428
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Jumbo Bacteriophages Are Represented Within an Increasing Diversity of Environmental Viruses Infecting the Emerging Phytopathogen, Dickeya solani Day,A.W., Ahn,J. and Salmond,G.P.C. 2018 — GenBank