Protein

View in Explore
Genbank accession
AGH31750.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect2
Probability 0,90
Protein sequence
MANIRKSFNFRSGLQVDNDNFVINANGLVGIGTSIPQNYLLNVYGDTRTTGLTTTRDLYVTQNVEVIGVTTVGVLTASSIDIANGVNVGGALTAATLKLTNGETVDNLIGFARTTFITDNGGVGLHTTSKIGINTTTSPGASDPELSVTGNVDVTGVITATTFSGNVTGDLNSSGVSTFTELKVGTAITMSVGIITATTFIGNLTGDVTGTATTATNLADGANITTGTIDDDRLPDLITSNINILSGTSYFNKIGVNTTTPSSDIHVRKNIQTEIQVTSDSNASLIGLGRSESITGYNGVLRYGNTDSAFSQFSDPYSLDIMNYGTGNLNFYLNPSEIVGTTGGFYWHKETQRLMALTSAGNLGVGITNPLYKLQVVGTAYVSGDVEFGNNLNLTNNLILGSGGNIGINSTIPTEKLDVVGNIAATGNIVSVGNITAGSISTTTGTSSQFLKADGSIDSSTYLTSALQNVVEDTSPELGGNLNLNGKSITGICTANFAGIVTTTRSITAAQGFTSGIGVTTPVQISVTGSTLTFNVVGVGSTSLTLS
Physico‐chemical
properties
protein length:547 AA
molecular weight: 56158,64690 Da
isoelectric point:4,47200
aromaticity:0,05850
hydropathy:0,11152

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AGH31750.1
1 547
Domain Start End Length (AA) Confidence
N-terminal 1 52 52 0,9786
Central domain 53 265 214 0,5001
C-terminal 266 547 281 0,6593
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-52
Central
53-265
C-terminal
266-547

Taxonomy

  Name Taxonomy ID Lineage
Phage Synechococcus phage S-SKS1
[NCBI] 		754042 Uroviricota > Caudoviricetes > Llyrvirus >
Host Synechococcus sp. WH 7803
[NCBI] 		32051 Bacteria > Cyanobacteria > Oscillatoriophycideae > Chroococcales > Synechococcus >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AGH31750.1 [NCBI]
Genbank nucleotide accession
HQ633071 [NCBI]
CDS location
range 169880 -> 171523
strand -
CDS
ATGGCAAATATTAGGAAGTCATTTAATTTTAGGTCTGGTCTTCAAGTTGATAATGATAATTTCGTAATTAATGCAAATGGTCTTGTAGGAATTGGAACTTCCATTCCACAAAACTATTTGTTAAATGTATATGGGGATACGAGAACTACTGGATTAACCACGACACGAGATTTATATGTAACTCAAAATGTTGAGGTAATTGGTGTAACGACCGTTGGAGTATTAACCGCAAGTAGTATAGATATTGCGAATGGTGTAAATGTTGGTGGTGCTCTTACGGCAGCAACACTTAAACTGACAAATGGAGAGACTGTTGATAATTTAATTGGTTTTGCAAGAACTACATTTATTACTGATAATGGTGGAGTAGGTCTTCATACAACATCAAAGATTGGTATCAATACCACAACAAGTCCTGGTGCATCTGATCCCGAACTTTCTGTGACTGGTAATGTTGATGTTACTGGTGTTATAACTGCAACCACTTTTTCTGGTAATGTAACTGGTGATTTAAATTCGAGTGGAGTTTCTACTTTTACTGAACTTAAAGTCGGAACAGCAATTACGATGTCTGTCGGTATTATAACGGCAACTACATTTATAGGAAATCTTACTGGTGATGTAACTGGAACTGCTACAACTGCCACTAATTTAGCAGATGGTGCAAATATAACGACCGGAACTATTGATGATGATAGATTACCTGATTTAATCACATCAAATATTAATATTCTTTCTGGAACTTCATACTTTAATAAAATAGGTGTCAATACGACCACACCTTCGAGTGATATTCATGTAAGAAAAAATATTCAAACGGAAATTCAGGTTACGAGTGATTCAAATGCATCTCTAATTGGTCTGGGTAGAAGTGAAAGTATTACTGGATATAATGGTGTATTGAGATATGGAAATACTGATTCAGCATTTTCTCAATTTAGTGATCCATATTCTCTGGATATAATGAATTATGGAACAGGTAATCTTAATTTTTACCTGAATCCGTCCGAAATTGTAGGAACAACTGGAGGATTCTACTGGCATAAAGAAACTCAAAGATTAATGGCACTTACTAGTGCAGGAAATCTTGGAGTGGGAATTACAAATCCCTTATATAAACTACAAGTTGTTGGTACTGCTTATGTAAGTGGAGATGTAGAATTTGGTAATAATCTTAATCTTACGAATAATCTAATATTAGGATCTGGTGGAAATATTGGAATTAATTCTACCATACCAACAGAAAAATTAGATGTTGTTGGTAATATTGCTGCTACTGGTAATATTGTTTCTGTTGGAAATATTACTGCTGGTTCTATTTCTACTACCACTGGAACATCATCTCAATTCTTAAAGGCAGATGGAAGTATAGATTCTTCTACATATTTGACATCTGCACTCCAAAACGTTGTAGAAGATACTTCCCCTGAGTTAGGTGGCAATTTAAATCTTAATGGCAAATCAATAACAGGAATTTGTACAGCTAATTTTGCCGGGATTGTAACAACAACTAGATCAATAACAGCAGCACAAGGATTTACAAGTGGTATTGGAGTAACAACTCCAGTCCAAATATCAGTCACTGGTTCTACATTAACCTTTAATGTTGTTGGAGTTGGAAGCACAAGCTTGACACTATCGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
e28963af34f24f5bcb1923b5883a0d6e3d87e4e6ebdfece8329e500298c64b4b
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6099
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Synechococcus phage S-SKS1 Henn,M.R., Clokie,M., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Chapman,S.B., Erlich,R., Young,S.K., Yandava,C., Zeng,Q., Alvarado,L., Anderson,S., Berlin,A., Chen,Z., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heilman,E.R., Heiman,D., Hollinger,A., Howarth,C., Larson,L., Mehta,T., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., White,J., Haas,B., Nusbaum,C. and Birren,B. 2011-09-23 — GenBank