Protein

View in Explore
Genbank accession
XPB67050.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,79
Protein sequence
MFDPVTNSGYSYTLATGDGFSKSFTFGFTGYGVGYLNAADVHVSVDGKEKPNTINPSDPNRVNLEEAPELGTTVLIRRIQPLDRVYSDFERGNVYNKDQINNSFLNQLYIAHQFLDGFFDGGDNDDGDEVATGNLNMRGFKIYNLAKNTNDPHEAARLDRVMGVEDRISGLENSLSDLQLTSIPWSPPVAVQGQTKFISPIGVINPVVWLNGVLQDPLKGDFTVSKAERALIFTEPLDAGDRVFALMGDPIADVRAYSMSSYARVWWPANGFRPKLTDGSTIVTHRPQGKIESPAHAFFADKTRSCQAVVITPPDMPVAQGVEMRFMVSGENAGNTRWRIETALQGPGEFQADFTNPVEFTVAVRPQDVTHYRSVFPIPAADISQVLYIRVSRVPQHPEDTLATSSEDAFFLGIALNYVAE
Physico‐chemical
properties
protein length:421 AA
molecular weight: 46397,35740 Da
isoelectric point:4,85129
aromaticity:0,10214
hydropathy:-0,27458

Domains

Domains [InterPro]
DC_0041
STR
1–410
DC_0041
IPR005604
ATT
7–117
IPR005604
XPB67050.1
1 421
Architecture
ATT
STR
ATT 1-117 | STR 118-410 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XPB67050.1
1 421
Domain Start End Length (AA) Confidence
N-terminal 1 377 377 0,7625
Central domain 378 410 34 0,0024
C-terminal 411 421 10 0,9980
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-377
Central
378-410
C-terminal
411-421

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage Alpheus
[NCBI] 		2163983 Uroviricota > Caudoviricetes > Autographivirales > Colwellvirinae > Nerthusvirus
Host Pseudomonas syringae pv. avii
[NCBI] 		663959 Pseudomonadota > Gammaproteobacteria > Pseudomonadales > Pseudomonadaceae > Pseudomonas > Pseudomonas syringae

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XPB67050.1 [NCBI]
Genbank nucleotide accession
PP954859.1 [NCBI]
CDS location
range 39750 -> 41015
strand +
CDS
ATGTTCGATCCAGTAACCAACAGTGGATACAGCTACACACTGGCCACGGGTGACGGCTTCTCGAAGTCCTTCACCTTCGGGTTCACTGGGTATGGCGTGGGCTACCTCAATGCCGCCGACGTGCATGTGTCCGTCGATGGCAAGGAGAAACCCAACACCATCAACCCTTCCGACCCGAACCGTGTCAACCTTGAGGAAGCTCCCGAGCTGGGTACTACCGTCCTCATTCGACGCATCCAGCCGCTCGACCGGGTTTACTCTGACTTCGAGCGCGGCAACGTGTACAACAAAGACCAGATCAACAACTCGTTCCTGAACCAGTTGTACATCGCCCACCAGTTCCTTGACGGGTTCTTCGATGGCGGCGACAACGACGACGGCGACGAGGTGGCCACTGGCAACCTCAATATGCGCGGGTTCAAGATCTACAACCTCGCCAAGAACACCAACGACCCACACGAGGCTGCACGTCTCGACCGGGTTATGGGCGTAGAGGATCGTATTAGCGGGCTGGAGAACAGCCTGTCCGACCTGCAACTGACCAGCATCCCTTGGTCGCCACCCGTGGCGGTACAGGGCCAGACCAAGTTCATCTCGCCTATCGGTGTTATCAACCCAGTTGTCTGGCTTAACGGCGTGCTGCAAGACCCGCTCAAGGGTGACTTCACAGTGAGCAAGGCTGAGCGCGCCCTGATCTTCACCGAGCCGCTGGACGCTGGCGACCGGGTGTTTGCCCTGATGGGTGACCCTATCGCTGACGTTCGTGCCTACAGCATGTCTAGCTATGCTCGCGTGTGGTGGCCAGCTAACGGGTTCCGCCCAAAACTGACAGATGGCAGCACCATCGTCACCCACCGCCCACAGGGCAAGATCGAGTCTCCTGCTCATGCGTTCTTCGCTGACAAGACACGATCCTGTCAGGCCGTGGTAATTACCCCTCCAGATATGCCCGTGGCTCAAGGTGTGGAGATGCGCTTCATGGTGTCCGGCGAGAACGCTGGCAACACCCGGTGGCGCATCGAGACTGCACTGCAAGGCCCCGGTGAGTTCCAAGCGGACTTCACCAACCCGGTGGAGTTCACGGTGGCTGTACGTCCGCAAGACGTTACCCACTATCGCTCCGTGTTCCCGATTCCAGCAGCGGACATCAGCCAAGTGCTGTACATCCGCGTGAGCCGGGTTCCACAACACCCCGAGGATACGCTGGCAACCTCCAGTGAGGACGCCTTCTTCCTCGGGATCGCCCTTAACTACGTCGCTGAATAG

Genome Context

Genome Context

Tertiary structure

PDB ID
384e899720bc7972b9d7f93b95b52d6092629a7fe1e724078d49cae5374b7797
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7574
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50