Protein

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Genbank accession
ALM63253.1 [GenBank]
Protein name
neck passage structure
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,93
Protein sequence
MSLDNFRKRAIVWDTVNKDFPQPIQVMQGDVNARTLSVKIIDNGGEIDLTGHSLKLTYQYTNSSNSGFVMIPPENLTKGEFILVIPTEMTKPGVIEANLVLLNEDKEQVIVSKNLTFISDNSTVTDLAQEVNNKIDDFTKLLLENMPQVMRSELNDLHAQTESNTSNIELKANQTDLNNLQTTVNNQGITISTAAQETEVRSMISLLDNVKQTKKVARINLLLEQYKTSGYYRQYTNGEKLVNTDYDLFDMVPVNADTDYFTGISPNAHIAFYDFEQKYISGLLKPQPNFATPSSYLNTLVVKVPTKAKYMSYACNKNATQSVFYENDNPILDPSQPIFEGLLPFEQTANPPRGIKKVCNQNMFNKKLVVSGRYLDSTSGGLPHNANYNVYFMKVKPNTNYTTSGFVNNHDAFYDISGKFISSGNKSGTITTPANAFFWGISLTNAELPGAVICEGNVAKYSDFGTGAIFEVGDTAPQTLNVGADKKFTTIQAAVDFAKDGDTILISSGTYHEAVDAKTKLLHFKGVDKNTVTLEYENGAYSLPPLEISKGSVENMTIHAISQAQVSGEPGKAYCFHADYDIQIGHTLSFTNVKFINDDKQVIGVGLRNNFTLEFNSCDFFTPSGNNAFYVHDDPIRDNSSNQNLIVKDCSIVNNGTGATIHMQSQERVGAVAKVTWQRNIVVNLSGGKLIDVATYNNGLAKDKWLGSSDFVLQPTSALNNIPQLNFN
Physico‐chemical
properties
protein length:728 AA
molecular weight: 80407,33550 Da
isoelectric point:5,30913
aromaticity:0,09203
hydropathy:-0,32404

Domains

Domains [InterPro]
IPR018913
ATT
10–147
IPR018913 DC_0775
G3DSA:2.60.40.3350
ATT
11–125
G3DSA:2.60.40.3350 IPR012334
IPR018913
ATT
25–147
IPR018913 IPR011050
ALM63253.1
1 728
Architecture
ATT
STR
ATT 10-147 | STR 148-726 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
ALM63253.1
1 728
Domain Start End Length (AA) Confidence
N-terminal 1 261 261 0,9445
Central domain 262 717 457 0,6024
C-terminal 718 728 10 0,3473
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-261
Central
262-717
C-terminal
718-728

Taxonomy

  Name Taxonomy ID Lineage
Phage Lactococcus phage 936 group phage Phi19.3
[NCBI] 		1636564 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Lactococcus lactis
[NCBI] 		1358 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Lactobacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
ALM63253.1 [NCBI]
Genbank nucleotide accession
KP793105 [NCBI]
CDS location
range 6862 -> 9048
strand +
CDS
ATGAGTTTAGATAATTTTAGAAAAAGAGCGATTGTATGGGATACGGTCAATAAAGACTTCCCACAACCAATTCAAGTAATGCAAGGCGACGTCAACGCTAGAACATTGTCAGTTAAAATAATTGATAATGGAGGCGAAATTGATTTGACTGGTCATTCATTAAAACTTACATATCAATATACTAATAGCAGTAATTCAGGCTTTGTTATGATTCCTCCTGAAAACTTAACTAAAGGAGAGTTTATTTTGGTAATTCCTACTGAAATGACAAAACCTGGAGTTATTGAAGCGAACTTGGTTCTTCTCAATGAAGATAAAGAGCAAGTTATCGTCAGTAAGAATTTAACATTTATATCAGATAATTCTACAGTTACAGATTTAGCTCAAGAAGTAAATAATAAGATTGATGATTTTACAAAATTATTATTGGAAAATATGCCACAAGTAATGCGCAGTGAGTTGAATGATTTACATGCTCAAACTGAATCAAATACGAGCAATATTGAGCTTAAAGCTAATCAAACGGATTTAAATAACTTACAAACTACTGTTAATAATCAAGGTATTACAATTTCCACAGCTGCTCAAGAAACAGAAGTACGTTCGATGATTTCGCTTTTAGATAATGTAAAGCAAACGAAGAAAGTAGCACGTATCAATTTATTATTAGAACAATATAAAACAAGTGGATATTATCGTCAATACACAAATGGCGAAAAATTGGTCAATACTGACTATGACCTTTTCGACATGGTGCCAGTAAATGCTGATACTGACTACTTTACGGGTATTTCGCCAAATGCACATATTGCATTTTATGACTTTGAACAAAAATATATTTCTGGACTTTTAAAGCCTCAGCCTAACTTTGCAACACCTTCTTCATATTTAAATACATTAGTTGTAAAGGTTCCGACGAAGGCTAAGTACATGTCTTATGCGTGCAATAAAAATGCAACTCAATCAGTTTTTTACGAAAACGATAATCCTATTTTAGACCCTTCTCAGCCAATTTTTGAAGGTTTACTACCATTTGAGCAAACCGCAAACCCTCCGCGTGGTATTAAAAAAGTGTGTAATCAAAATATGTTTAACAAAAAATTAGTTGTATCTGGAAGATACTTAGATTCAACAAGTGGTGGACTACCTCATAATGCTAATTATAATGTTTATTTTATGAAAGTAAAACCAAACACAAATTATACAACAAGTGGATTTGTTAATAACCATGATGCCTTTTATGATATATCAGGTAAATTCATTTCATCTGGAAACAAAAGCGGAACAATTACAACACCAGCGAATGCTTTCTTTTGGGGTATATCATTGACTAATGCGGAATTGCCTGGGGCTGTTATCTGCGAGGGTAATGTTGCTAAATATAGTGATTTTGGCACAGGTGCCATATTTGAAGTTGGGGACACCGCCCCTCAAACTTTAAATGTTGGAGCTGATAAAAAATTTACTACCATTCAAGCTGCGGTTGATTTTGCAAAAGACGGTGATACTATCCTGATTTCTTCCGGAACTTATCATGAAGCAGTAGACGCCAAGACTAAGCTATTGCATTTTAAGGGTGTTGATAAAAATACGGTAACCCTAGAATACGAAAACGGAGCATACTCGTTGCCACCTTTGGAAATTTCTAAAGGAAGTGTTGAAAATATGACTATCCATGCAATCAGCCAAGCACAAGTTTCCGGAGAGCCTGGGAAAGCATATTGTTTCCACGCTGACTACGACATTCAAATTGGGCATACCTTGTCTTTTACAAATGTAAAATTCATTAATGATGATAAGCAAGTCATTGGCGTTGGATTGAGAAATAACTTTACTCTTGAATTTAATAGTTGTGATTTTTTTACACCGTCCGGAAACAATGCTTTTTATGTACATGATGACCCAATCCGCGACAATTCAAGTAATCAGAATTTGATCGTTAAAGACTGCTCAATCGTTAATAATGGAACTGGTGCGACTATCCACATGCAATCGCAAGAACGTGTCGGGGCAGTTGCTAAGGTAACGTGGCAGCGCAATATTGTTGTTAATTTGTCAGGTGGTAAATTAATCGACGTGGCAACTTATAACAATGGTTTAGCAAAAGATAAATGGCTCGGCTCGTCTGACTTCGTGTTACAACCAACTTCTGCGCTGAATAATATTCCTCAATTAAATTTTAATTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
b36308314f40627e9caaefd829c0cc3b3ad6a32d933930787206757a7d25cf6d
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7004
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Comparative genomics and functional analysis of the 936 group of lactococcal Siphoviridae phages Murphy,J., Bottacini,F., Mahony,J., Kelleher,P., Neve,H., Zomer,A., Nauta,A. and van Sinderen,D. 2016 26892066 GenBank