Protein

View in Explore
Genbank accession
QBX30985.1 [GenBank]
Protein name
capsid and scaffold protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MSIVTMTFNEHDFSDLIVIHDIRRDIGNETSLTLTDGPKIGAIVTDKTINPKYIEVDFSIWAEDRNTLKRKLAKYFETESEAKLLFSDEPNVYYLARKTGKIPTREGRGYWSTGTVTFLIPDGVAHSTTYRRFDNPTVKSDHLAFRLKNDGTTDAFPIITVKHNSENGYLAAVNAKGATAIGNREEADTVSVKQSEMLLDFRDSKIGNALTSGTPNIGIMNDQNANPVFSGNIRKVNVWGRDHLELNGRGFSSLTWDIPNDSAGGVGSLNDYLWWRQIFWLGATNQYGAMKITVSDSNGQFLYGVETFKRSNGLDCEYNFMATDGKGGYNMIKQWRFTGTHWDYHNPFNESRGWSDLKRNDDRVTVYWFGTYNEFYIPEIKGKKSKKIHIAFSSIGNHPIVSHMYLDSFYYRKDHVSIAKDIPNRYPIGSTVVIDCEDDTITVDGMDRFGDRIQGSSWLKIPPGESELEIYCSSWIRNKPTVSIQFEERYL
Physico‐chemical
properties
protein length:491 AA
molecular weight: 55865,87240 Da
isoelectric point:6,09339
aromaticity:0,12016
hydropathy:-0,52749

Domains

Domains [InterPro]
DC_0420
STR
1–491
DC_0420
G3DSA:2.40.30.200
ATT
2–126
G3DSA:2.40.30.200 IPR054738
IPR006520
Unmapped
6–126
IPR006520
IPR008841
STR
21–119
IPR008841
QBX30985.1
1 491
Architecture
ATT
STR
ATT 1-126 | STR 127-491
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QBX30985.1
1 491
Domain Start End Length (AA) Confidence
N-terminal 1 194 194 0,9749
Central domain 195 396 203 0,2491
C-terminal 397 491 94 0,4971
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-194
Central
195-396
C-terminal
397-491

Taxonomy

  Name Taxonomy ID Lineage
Phage Streptococcus phage Javan584
[NCBI] 		2548274 No lineage information
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QBX30985.1 [NCBI]
Genbank nucleotide accession
MK448990 [NCBI]
CDS location
range 32820 -> 34295
strand +
CDS
ATGAGTATCGTAACAATGACATTTAATGAGCATGATTTTTCGGATTTGATTGTTATCCACGATATTCGTCGTGATATTGGAAATGAAACTTCATTGACTTTAACGGATGGACCAAAGATTGGGGCGATTGTTACTGATAAAACAATTAATCCAAAATATATTGAAGTGGATTTCTCTATATGGGCAGAGGATAGAAATACCTTGAAGCGTAAACTTGCAAAGTATTTTGAAACGGAGTCAGAAGCGAAGTTATTGTTTTCTGATGAGCCAAATGTTTACTACTTGGCAAGAAAGACAGGGAAAATTCCCACTAGAGAGGGAAGGGGATATTGGTCGACTGGGACGGTGACATTTTTGATTCCTGATGGGGTCGCTCATTCGACAACGTATCGGCGATTTGATAATCCCACTGTAAAATCAGATCATTTGGCATTCCGTTTAAAAAACGATGGGACTACAGATGCCTTTCCGATTATTACTGTAAAACACAATTCTGAGAATGGTTATCTTGCTGCAGTAAATGCTAAGGGTGCTACAGCTATTGGAAATAGAGAGGAAGCTGACACTGTATCTGTTAAGCAGTCTGAGATGCTACTGGACTTTAGAGATTCAAAAATTGGCAATGCTTTAACTTCTGGCACTCCTAACATTGGAATCATGAATGACCAAAACGCAAATCCTGTATTCAGCGGCAATATTCGTAAGGTTAATGTTTGGGGGCGTGACCATCTTGAATTAAACGGTCGTGGTTTTAGTTCTCTTACCTGGGATATTCCAAACGATAGTGCTGGTGGCGTTGGGTCTCTCAATGATTACTTGTGGTGGAGACAAATTTTTTGGCTTGGTGCTACAAATCAGTACGGAGCTATGAAAATTACGGTATCGGATAGCAACGGTCAATTTTTATACGGTGTAGAAACATTTAAGAGAAGCAATGGGCTTGATTGTGAATATAATTTTATGGCTACCGATGGAAAAGGTGGTTACAACATGATTAAGCAATGGCGATTTACAGGTACACATTGGGATTATCACAATCCTTTCAATGAATCTCGTGGCTGGTCTGATTTAAAGAGAAATGATGATAGGGTAACGGTCTATTGGTTTGGCACCTACAATGAGTTCTACATTCCTGAGATTAAAGGGAAAAAGTCTAAGAAAATCCATATTGCTTTCTCATCAATTGGGAACCATCCGATTGTATCACACATGTATTTGGATAGTTTCTACTACCGCAAGGATCATGTTAGCATCGCTAAAGATATTCCAAATCGTTATCCAATTGGTTCTACGGTCGTTATTGATTGTGAGGATGACACTATAACTGTTGATGGCATGGATCGTTTTGGAGACCGCATTCAAGGGTCTTCGTGGTTGAAAATTCCGCCTGGAGAGAGTGAGTTAGAGATTTATTGTTCTAGCTGGATTAGGAATAAACCTACTGTGTCTATTCAATTTGAAGAGAGGTATCTATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
60de4a663a054fe5e0012ac1b9331fa59d6a2d718f2095b3b9be46b9a0c7e7da
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,9026
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Prophages and satellite prophages are widespread among Streptococcus species and may play a role in pneumococcal pathogenesis Rezaei Javan,R., Ramos-Sevillano,E., Akter,A., Brown,J. and Brueggemann,A.B. 2018-12-20 — GenBank