Protein

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Genbank accession
ABQ12470.1 [GenBank]
Protein name
tail tubular protein B
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MVNSFERRTQQGDDLGIRSSNFGGLNTTASPLNIPYEDSPNLLNVDVDVSGNVSKRQGTEILLKYANTTPVYTFPVKSVLGYDYVLTKSGGLLEVAGVIGKAVGAYKSFSNVFSAAAANVKPYFTLLSDVEPRVLILTGTNTPVQVKFVEQTFTTTSGSPTTTVVIPNASRFQYDTPILYMNRNFTSGATYSYNSTTRALTISNLPSWSGSMTFDLVLPVWSWWAESLRWFGDRFYDAVSRFNVNKADQSVAIPAALRSDLDTIQGTYGRYPMLLYKTATFNDTYTFSNTGQPANADSYGWGDGSVYNVGASAYLNTSPFFATFGDTRTPTPQPPETVHLLRQRELRFNYGNGATGANLRVTVDGTALSANYSSTVAGTNRAYALYKADGTLCTSASDLAYYIAFTGATPLGISPTAAVTITNVDRTYIGSAATQTDNAYVQGGYFKVYGLGLWANYGTGQFPRIATVYQSRLVLGGFTNDPTRVVFSATGDTVEGGVKYNFFQVTDDLDGLDSDPFDLVVSSSQADDYVTGLVEWQSSLFVLTRRATFRANGGDATISPARRFVNYISSLGLVNPFSVVRTDTAVFYLSDSGVFNLTPRVEDGEYQAIEKSIKIRKVFGKTTSTAVSSAAWMSFDQNRKVLYVALPRGSETTVASALYVYNTFRDSWTQYDTLGGFKTYTGHPYVDTVLGDSFLLMVAYGGTVCMLKLYGSRYVDFFNKCGSFTGNVLTANSGIYTWTAPFWNSPVISNISVSGTTTLAVQRYELPTDLQVVPYDNVEDLSIYVNGTRLSFGTDWVKQGKAIYLLSDPGDGKTVSIVPRCPVNVSYQGDVTFDETTAQTVWVNNLLQIQGTDYTLSGSTLTFTDTLTNAVVEVGNAYISYYQSPMFLLGSLSNLKKVKHVYLYFDNEDVLPVYTIGDLASGQDVDDLVGKWKTRANANISVTYDSENTSETSYDIYSFSDLVWDNAFFDVDPTNLQSTRYALFKEALLGVGYNYQIGVWSFDEASWKLCGYQVDARLSGKRYTGGN
Physico‐chemical
properties
protein length:1027 AA
molecular weight: 112582,07570 Da
isoelectric point:4,91375
aromaticity:0,13340
hydropathy:-0,13038

Domains

Domains [InterPro]
DC_1821
STR
1–1027
DC_1821
ABQ12470.1
1 1027
Architecture
STR
STR 1-1027
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
ABQ12470.1
1 1027
Domain Start End Length (AA) Confidence
N-terminal 1 145 145 0,8642
Central domain 146 462 318 0,8821
C-terminal 463 1027 564 0,0547
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-145
Central
146-462
C-terminal
463-1027

Taxonomy

  Name Taxonomy ID Lineage
Phage Phormidium phage Pf-WMP3
[NCBI] 		2914005 Uroviricota > Caudoviricetes > Saffermanviridae > Wumptrevirus WMP3 >
Host Leptolyngbya foveolarum
[NCBI] 		47253 cellular organisms > Bacteria > Bacillati > Cyanobacteriota/Melainabacteria group > Cyanobacteriota > Cyanophyceae

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
ABQ12470.1 [NCBI]
Genbank nucleotide accession
EF537008 [NCBI]
CDS location
range 30317 -> 33400
strand -
CDS
ATGGTTAACTCTTTTGAACGACGAACACAACAAGGTGATGACCTTGGTATCAGGTCAAGTAACTTTGGTGGTCTAAACACTACAGCGTCACCGTTAAACATCCCGTATGAGGACAGCCCAAACCTACTTAACGTAGATGTAGACGTAAGCGGTAACGTCAGTAAACGACAAGGAACGGAGATACTACTAAAGTATGCCAACACAACGCCTGTGTACACGTTTCCTGTTAAGTCTGTGCTTGGGTACGACTATGTACTTACTAAGTCTGGTGGGCTGCTTGAAGTAGCTGGTGTTATCGGCAAAGCAGTAGGGGCTTACAAGAGCTTTAGTAACGTGTTTTCCGCTGCCGCAGCTAACGTTAAACCGTACTTCACTTTGTTGTCGGACGTAGAACCTCGTGTACTCATCCTGACTGGGACAAACACACCTGTACAGGTCAAGTTCGTAGAGCAAACCTTTACGACTACAAGTGGTTCACCTACGACAACTGTAGTGATCCCGAACGCTTCTAGGTTTCAGTACGACACACCTATCCTGTACATGAACCGTAACTTCACTAGTGGTGCTACGTACTCGTATAACTCGACAACCAGAGCACTGACTATCAGTAACTTACCGTCATGGTCTGGAAGTATGACCTTTGACTTGGTGTTACCTGTGTGGTCGTGGTGGGCTGAGTCCTTGCGTTGGTTTGGTGACAGGTTCTATGACGCTGTGTCTAGGTTCAACGTGAACAAAGCTGACCAGTCTGTAGCTATCCCTGCTGCACTACGAAGCGACTTAGACACCATACAAGGTACGTATGGTCGATACCCTATGTTGTTGTACAAGACTGCTACGTTCAACGACACGTACACGTTCAGTAACACAGGACAACCAGCTAACGCAGACTCGTATGGGTGGGGTGATGGTTCTGTCTACAACGTAGGAGCATCAGCATACCTGAACACTTCCCCGTTCTTTGCTACGTTTGGTGATACTCGTACACCAACACCACAACCACCTGAAACGGTACATCTGTTAAGACAGCGAGAGCTACGGTTTAACTACGGTAACGGCGCTACTGGTGCTAACTTACGAGTCACTGTAGACGGTACTGCTTTGTCTGCAAACTACAGCAGCACAGTAGCAGGAACAAACAGAGCGTATGCGTTGTACAAGGCTGATGGTACGTTGTGTACATCCGCTAGTGATCTTGCTTACTACATAGCGTTTACAGGTGCGACACCACTAGGTATCTCACCAACAGCAGCAGTAACTATCACAAACGTAGACAGAACATACATCGGCAGTGCAGCGACACAAACAGATAACGCGTATGTCCAAGGTGGATACTTTAAGGTTTACGGTCTTGGACTGTGGGCTAACTACGGTACTGGTCAGTTCCCTCGTATCGCTACCGTTTACCAGTCACGTCTAGTACTTGGTGGTTTCACCAACGACCCTACACGTGTTGTCTTCAGTGCGACTGGTGACACGGTAGAAGGTGGTGTTAAGTACAACTTCTTTCAGGTTACAGATGACCTTGATGGTCTAGACTCTGACCCCTTTGACCTTGTTGTGTCGTCATCTCAAGCAGACGACTACGTAACTGGTCTGGTCGAGTGGCAGTCATCTTTGTTTGTCTTGACTCGTAGAGCCACGTTTAGAGCTAACGGCGGTGATGCAACCATCTCACCAGCTAGACGGTTCGTGAACTACATCTCATCACTAGGTCTTGTTAACCCCTTCAGTGTCGTACGTACTGATACTGCTGTGTTCTATCTGTCTGATAGTGGTGTGTTTAACCTGACACCTCGTGTAGAAGACGGTGAGTACCAAGCTATCGAGAAGTCTATCAAGATCCGTAAGGTGTTTGGTAAGACAACAAGTACTGCTGTTTCTAGCGCTGCTTGGATGTCTTTTGATCAAAACCGTAAGGTACTTTATGTAGCTCTACCTCGTGGTTCTGAGACAACAGTAGCTAGTGCTTTGTATGTCTATAACACGTTTCGTGACTCATGGACGCAGTACGACACACTAGGAGGGTTCAAAACATACACAGGACATCCATATGTTGATACTGTCCTTGGTGATAGTTTCTTACTGATGGTTGCCTACGGTGGTACTGTCTGTATGTTGAAGCTATACGGAAGTCGTTACGTAGACTTCTTTAACAAGTGTGGTTCTTTTACGGGTAACGTACTGACAGCTAACAGCGGTATCTACACATGGACAGCACCTTTCTGGAACAGTCCAGTTATCTCTAACATATCTGTCTCAGGTACGACAACACTAGCCGTACAGCGGTATGAGCTACCTACAGATCTTCAAGTAGTGCCTTACGACAACGTAGAAGACTTGTCTATCTACGTCAACGGTACACGTTTATCTTTTGGTACTGACTGGGTTAAACAAGGAAAAGCTATCTACTTGTTGTCTGACCCAGGTGACGGTAAGACCGTAAGCATAGTACCTCGTTGTCCTGTTAACGTCAGTTATCAAGGTGATGTAACGTTTGACGAGACAACCGCACAGACTGTGTGGGTAAACAACTTACTTCAGATACAGGGCACTGACTACACACTAAGCGGTTCAACACTGACCTTTACTGACACACTGACTAACGCAGTAGTAGAGGTTGGTAACGCGTACATCTCGTACTACCAGTCTCCTATGTTCCTGCTTGGTTCGTTGTCTAACCTGAAAAAGGTGAAGCATGTGTACCTGTACTTCGACAACGAAGATGTGCTACCTGTCTACACTATCGGTGATCTGGCTTCTGGTCAGGATGTAGATGACTTAGTTGGTAAGTGGAAGACACGAGCTAACGCTAACATCTCTGTCACATACGACAGTGAGAACACGTCTGAGACTTCTTACGACATCTATAGCTTTAGTGACCTAGTGTGGGATAACGCGTTCTTTGATGTAGACCCAACAAACTTACAGTCAACACGTTACGCGCTCTTTAAGGAAGCACTACTAGGTGTCGGGTACAACTATCAGATAGGTGTCTGGTCGTTTGATGAGGCTTCGTGGAAACTCTGTGGTTATCAGGTTGATGCAAGACTCAGTGGTAAACGCTACACAGGAGGAAACTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
8909aeac2b5cca73a8d677e2499cca7ca96af401df2f01fdcb9fab26e123eb4c
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5487
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genomic analysis of freshwater cyanophage Pf-WMP3 Infecting cyanobacterium Phormidium foveolarum: the conserved elements for a phage Liu,X., Kong,S., Shi,M., Fu,L., Gao,Y. and An,C. 2008 18443848 GenBank