Protein

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Genbank accession
AXF51140.1 [GenBank]
Protein name
putative virion structural protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MGLYDKNALGLLCQQIMRDNPDLPYVLSGETIIVLEGPATNGLGTSGRNTRVVLNGRTGAGFVGKRDFFYDRINVGTLYNGLPDKLVLTVPNDVVTNADLLPTIKDALGITLTADDLVSPNTALGLGRSPTEVSLAINTSCLSFTGTLKFKWQRGYAGYYPDSGPGSKYMLMGTMDEGYFGVVSSTELVGGREIYQALLAGQGTQGAVSVTDALTWLKFALDGEIVYFPCQNLFTKVAWNDYYALGAVYDRDDSGSEFVTNEPVKQRKYVVLETGEGRQFFRVRLPKVSTTDPITPSRGDPTGEPARLFNKVHRQSYGTGTWDLLTVSDFDASTAHVWVNGRADVDGNVIYTSPNEGSVESVARTARTNGRVLLILTDGEDVTLPVEGISGRVVGKILPPLLNIDQTRDADMVVRLTDIQSTYQRTIQPPLMAHPVGNPVVKVTDIDFSSTVNGFTSYGLELAPPRNVGDLNFSSLVSPFGVRFESVAHVAVDLANCDGELNGFQ
Physico‐chemical
properties
protein length:505 AA
molecular weight: 54639,95170 Da
isoelectric point:4,86209
aromaticity:0,08713
hydropathy:-0,10812

Domains

Domains [InterPro]
IPR057701
STR
1–155
IPR057701
IPR057701
STR
1–150
IPR057701 DC_0860
AXF51140.1
1 505
Architecture
STR
STR 1-470 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AXF51140.1
1 505
Domain Start End Length (AA) Confidence
N-terminal 1 145 145 0,8779
Central domain 146 494 350 0,4232
C-terminal 495 505 10 0,0717
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-145
Central
146-494
C-terminal
495-505

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage SPAsTU
[NCBI] 		2136797 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Salmonella enterica
[NCBI] 		28901 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AXF51140.1 [NCBI]
Genbank nucleotide accession
MH221129 [NCBI]
CDS location
range 247568 -> 249085
strand -
CDS
ATGGGGTTGTACGATAAAAATGCGCTGGGTTTGTTATGCCAGCAAATTATGCGTGATAACCCCGACTTACCTTACGTCTTGAGCGGAGAGACAATTATTGTACTCGAAGGTCCCGCGACTAACGGATTGGGTACTAGCGGGCGAAATACCCGCGTAGTGCTGAACGGTCGAACAGGCGCGGGTTTCGTAGGTAAGCGGGATTTCTTTTACGATCGAATCAATGTGGGGACACTTTATAACGGGTTACCAGATAAGTTAGTGTTGACGGTGCCTAACGACGTAGTCACCAATGCTGACTTGTTACCAACGATCAAGGACGCGCTGGGGATAACCTTAACAGCCGACGACCTGGTATCCCCAAACACAGCATTGGGTCTGGGTCGAAGTCCTACAGAAGTTTCCTTGGCTATTAACACCAGCTGTTTATCATTTACCGGCACTTTGAAGTTTAAATGGCAACGCGGTTACGCAGGGTACTATCCTGACTCCGGACCAGGTTCAAAATACATGCTGATGGGTACCATGGATGAGGGATACTTTGGCGTGGTGTCTTCTACCGAGTTGGTCGGGGGTAGAGAAATCTATCAAGCACTCTTGGCGGGACAAGGTACTCAAGGGGCAGTTTCTGTCACTGACGCATTAACCTGGTTGAAATTTGCACTGGATGGCGAGATTGTTTATTTCCCTTGTCAAAACCTGTTTACGAAAGTTGCATGGAATGACTATTATGCGCTTGGCGCAGTATACGATCGTGACGACAGTGGGTCAGAATTTGTTACGAACGAACCTGTAAAACAGCGGAAGTATGTCGTATTGGAAACAGGCGAAGGAAGACAATTTTTCCGGGTGCGCTTACCGAAGGTTTCGACAACTGACCCGATAACTCCGTCGCGCGGTGACCCAACCGGTGAGCCGGCCAGACTCTTTAACAAAGTACACAGGCAATCTTACGGAACGGGAACCTGGGACTTATTAACGGTCTCCGACTTTGATGCGTCTACTGCACACGTCTGGGTCAATGGACGAGCTGATGTCGATGGGAACGTGATATACACATCACCCAACGAAGGCAGCGTTGAAAGTGTGGCCAGAACCGCAAGAACGAATGGTCGCGTGCTGTTGATTCTAACCGACGGTGAAGACGTTACTTTGCCGGTTGAGGGAATCAGTGGTCGGGTTGTTGGAAAGATTCTTCCTCCGCTCCTAAACATTGACCAAACTCGCGATGCGGACATGGTCGTACGTCTCACCGATATTCAGAGTACGTATCAGCGTACCATACAGCCGCCACTGATGGCACACCCTGTGGGTAACCCGGTGGTGAAAGTCACGGATATCGATTTCTCTAGTACGGTTAATGGATTTACGAGTTACGGGCTTGAGCTTGCACCACCGCGTAACGTCGGTGATTTGAACTTCTCTTCTTTAGTTTCTCCGTTCGGCGTCCGTTTCGAATCTGTTGCACACGTGGCAGTTGACCTCGCGAACTGCGATGGCGAACTCAATGGTTTTCAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
46a084ddc73676fa5207cc7a5c5a62f69d3fe8b6b18738ac0cb909296269be50
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5946
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence for lytic Bacteriophages STsAS and SPAsTU against Salmonella enterica serovar Typhi and Paratyphi A Sanirbandha,C., Yukgehnaish,K., Sivachandran,P., Lee,S.Y., Lalitha,P. and Ravichandran,M. — — GenBank