Protein

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Genbank accession
CCE60810.1 [GenBank]
Protein name
phage particle protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MLDLDRQEIKNAVGIFTDPNPSDLPPNAWNEGRNVRFKDGKAIKSQGHEAVFGALPGGRGPKYAMPYLSEATPYWFVTGGDKIFRTEGTAYIDVSRAAPYSTIPSAKWNGGFLSGVAIMNNGVDVPQFVTTFGGSQFADLTNWPVGLQAKVVRPFKNYLIALNLTKTSVQMPTVVKWSSPADPGNVPFTWDETDPTNDAGENPLADTAGAIVDGKKLRDQFIIYKEDSVYTMRYIGGVFVFQFQQLFDDVGMISQNCAAEFDGKHFVVGQGDVYVHNGVQKNSVIEGKVKKALFDAIRAGSNNSVFVVPDYANSEMWVCFQSTAEAVSGSYCDRAAIYNWTTGLWTFRDLPQIVYATFGVIDPRTPDTWASDPNPWDSDTTVWGNSTYNPAKNKILLVSESNKATYSVGDTSLFGTSSFKSTLMRTDLYGGDDLHFKNVNSITPHIKGSGICNIYVGASQIMDAPVRWQGPFPYKIGTDFKIDCRVQGRYIGVRFEFDSVGQWEFSGYTIETNKLGGKR
Physico‐chemical
properties
protein length:519 AA
molecular weight: 57235,58740 Da
isoelectric point:5,54467
aromaticity:0,12717
hydropathy:-0,29480

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
CCE60810.1
1 519
Domain Start End Length (AA) Confidence
N-terminal 1 378 378 0,6332
Central domain 379 508 131 0,1423
C-terminal 509 519 10 0,9976
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-378
Central
379-508
C-terminal
509-519

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage tf
[NCBI] 		1114179 Uroviricota > Caudoviricetes > Krylovvirus >
Host Pseudomonas putida
[NCBI] 		303 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Pseudomonadales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
CCE60810.1 [NCBI]
Genbank nucleotide accession
HE611333 [NCBI]
CDS location
range 32028 -> 33587
strand -
CDS
ATGCTCGACCTCGACCGGCAGGAAATTAAGAACGCGGTTGGTATCTTTACTGACCCGAACCCGTCTGACCTTCCTCCTAACGCTTGGAACGAGGGTCGTAACGTTAGGTTCAAAGATGGTAAGGCCATCAAGTCGCAAGGCCATGAGGCGGTCTTCGGGGCACTCCCCGGGGGCCGGGGGCCTAAGTATGCTATGCCATATCTCTCGGAAGCTACCCCCTATTGGTTTGTGACCGGTGGGGACAAAATCTTCCGAACTGAAGGTACAGCCTATATTGATGTATCCCGAGCAGCTCCTTACTCCACAATCCCTTCTGCTAAGTGGAATGGTGGTTTCCTCTCGGGCGTAGCCATCATGAATAATGGAGTGGACGTCCCCCAGTTTGTTACTACCTTTGGTGGCAGCCAATTCGCAGACCTGACTAACTGGCCTGTTGGATTGCAAGCCAAGGTTGTCCGTCCATTCAAGAACTACCTCATTGCCCTGAACCTCACCAAGACTTCTGTCCAGATGCCAACTGTGGTTAAGTGGTCCAGTCCGGCCGATCCCGGCAACGTACCCTTCACTTGGGACGAGACTGATCCTACGAACGACGCTGGTGAGAACCCACTGGCGGACACCGCTGGTGCAATCGTAGATGGCAAGAAGCTGCGTGACCAGTTCATCATCTACAAAGAAGACTCTGTATACACCATGAGATACATCGGTGGTGTGTTCGTCTTCCAGTTCCAGCAGCTCTTCGATGACGTTGGGATGATCTCTCAGAACTGCGCAGCTGAATTCGACGGTAAACACTTCGTTGTAGGCCAAGGTGACGTCTATGTTCACAACGGCGTACAGAAGAACTCGGTAATCGAAGGGAAGGTTAAGAAGGCCCTTTTTGATGCCATCCGTGCGGGCTCCAACAACTCCGTCTTCGTCGTCCCGGACTACGCCAATAGTGAGATGTGGGTTTGCTTCCAAAGCACCGCAGAGGCCGTCTCTGGGTCTTATTGCGACCGTGCGGCCATCTATAACTGGACTACTGGCCTGTGGACCTTCCGGGATCTTCCCCAGATCGTCTATGCTACCTTTGGTGTAATCGACCCACGCACCCCTGACACTTGGGCATCTGACCCCAACCCTTGGGACTCCGATACGACTGTCTGGGGTAACTCCACTTACAACCCAGCCAAGAACAAGATTCTGCTGGTGTCTGAGAGCAATAAGGCCACCTACTCTGTGGGTGACACCTCTTTGTTTGGTACATCCAGTTTCAAGTCCACCTTAATGAGGACTGACTTGTATGGTGGGGATGACCTCCACTTCAAGAACGTCAACTCTATCACCCCTCACATCAAGGGCTCGGGCATCTGTAACATCTACGTGGGTGCATCCCAGATCATGGACGCCCCTGTTCGTTGGCAAGGGCCTTTCCCATACAAGATTGGGACTGACTTTAAGATCGACTGTCGGGTACAGGGACGATACATTGGTGTCCGCTTTGAGTTCGACAGTGTAGGGCAGTGGGAGTTCTCAGGGTACACCATTGAGACTAACAAGTTGGGAGGCAAGAGATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
a8f47b9cf6b8a3bd84ecd66315f82949a60a551caa68033642deb36d69fb3e85
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,9034
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genomic Analysis of Pseudomonas putida Phage tf with Localized Single-Strand DNA Interruptions Glukhov,A.S., Krutilina,A.I., Shlyapnikov,M.G., Severinov,K., Lavysh,D., Kochetkov,V.V., McGrath,J.W., de Leeuwe,C., Shaburova,O.V., Krylov,V.N., Akulenko,N.V. and Kulakov,L.A. 2012 23236447 GenBank