Protein

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Genbank accession
YP_009304482.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,94
Protein sequence
MSTLRVDTLQKPDNSVTVNLEDIITEVNLGDTTSPTKGAGLVGFSSSVSYPDGTIGAEILEVSSKIGVTVKDYGAVGDGVTDDTVAIQAAITAVGQYKDLGWPRGTYLITQKLVMPTGQRWIGSGGQRGATIKKGANIDMVEVGTLCTVLDISLEGEGATYSGKGFVIASGFSQNLVRCRAVNMGGEPLYFANNAGGGANVTAFEGYPVDTDTYAGCVIAGDTSPHPRFFRGMWLSGANFALGPGAGNGGSMTQFYIRDLRFDPTSTLFHISNGRCATLGATTTLKGFDHSIDGVAFAGPVALDSAQGINLGPSCSVPSLTENATNSQYNSVYVQRRTYTPTWTQTSATPAIGNGTLTGNYVRAGHMCHVQIELVAGSTTTFGDAASGYRFSLPFPGHLSFNQRGFPVRIYDTSASADFTGWASIGAGQDYITISVGAQQVRSTSPMTWATGDTLHCSFSYMTR
Physico‐chemical
properties
protein length:464 AA
molecular weight: 48680,78270 Da
isoelectric point:5,49897
aromaticity:0,09267
hydropathy:-0,06444

Domains

Domains [InterPro]
DC_2249
ATT
2–194
DC_2249 DC_1128
IPR012334
STR
57–389
IPR012334
IPR011050
STR
67–319
IPR011050
IPR024535
ENZ
69–143
IPR024535
YP_009304482.1
1 464
Architecture
ATT
STR
RBD
ATT 2-194 | STR 195-389 | RBD 390-464
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009304482.1
1 464
Domain Start End Length (AA) Confidence
N-terminal 1 84 84 0,9760
Central domain 85 324 241 0,9863
C-terminal 325 464 139 0,9873
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-84
Central
85-324
C-terminal
325-464

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage O4
[NCBI] 		1784982 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Pseudomonas aeruginosa PAO1
[NCBI] 		208964 Bacteria > Proteobacteria > Gammaproteobacteria > Pseudomonadales > Pseudomonadaceae > Pseudomonas

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009304482.1 [NCBI]
Genbank nucleotide accession
NC_031274.1 [NCBI]
CDS location
range 1352 -> 2746
strand +
CDS
ATGAGTACGTTGAGAGTAGACACTCTACAAAAACCTGATAACAGCGTCACTGTTAATCTGGAAGATATCATTACGGAAGTGAATCTAGGTGATACCACTTCCCCCACTAAAGGAGCTGGCCTAGTAGGTTTCTCTAGTAGCGTTAGCTATCCTGATGGTACTATAGGGGCTGAAATCCTAGAGGTAAGCTCTAAGATTGGCGTTACAGTAAAAGACTATGGTGCTGTTGGTGATGGCGTCACTGATGATACTGTAGCAATTCAAGCAGCCATCACTGCGGTTGGACAATATAAAGACTTAGGTTGGCCTCGTGGTACCTACCTAATTACTCAGAAGTTGGTAATGCCAACTGGCCAAAGATGGATAGGTTCTGGTGGCCAACGTGGTGCCACTATCAAGAAGGGCGCCAACATCGACATGGTAGAAGTAGGTACTCTGTGTACTGTTCTTGATATTAGTCTAGAAGGTGAGGGAGCTACTTACTCCGGTAAAGGGTTTGTAATTGCGTCTGGCTTCAGTCAGAACCTAGTGCGTTGCAGAGCCGTTAACATGGGTGGTGAACCGCTATACTTCGCTAATAACGCAGGTGGCGGTGCAAACGTAACAGCGTTTGAAGGTTACCCTGTAGATACGGATACTTACGCTGGGTGCGTTATTGCAGGAGATACTTCTCCTCATCCTCGGTTCTTCCGTGGTATGTGGTTGAGCGGTGCTAACTTTGCCCTTGGCCCTGGTGCAGGTAATGGCGGATCGATGACTCAATTCTACATTAGGGATTTGAGGTTTGATCCTACTTCAACTCTGTTCCACATTTCCAATGGACGTTGTGCAACTCTTGGAGCCACGACGACTCTTAAGGGTTTCGATCACTCAATTGATGGCGTTGCTTTTGCAGGTCCAGTTGCACTCGATTCTGCTCAAGGCATTAACCTTGGTCCGTCTTGCTCTGTACCGTCACTCACGGAGAATGCGACTAACTCGCAATACAACTCCGTCTATGTACAGCGTAGAACCTACACTCCAACTTGGACGCAGACTAGTGCTACTCCTGCAATTGGCAATGGTACCTTAACTGGTAACTATGTCCGAGCTGGCCATATGTGTCATGTGCAGATTGAATTGGTAGCAGGTTCGACTACGACCTTCGGTGATGCTGCATCAGGCTATCGTTTCTCTCTGCCGTTCCCTGGCCACCTGTCTTTCAACCAGAGGGGATTCCCTGTGCGAATCTACGACACTAGTGCTAGTGCAGATTTCACTGGGTGGGCATCCATTGGTGCGGGCCAAGATTACATCACCATCTCTGTGGGAGCACAGCAGGTTCGTTCTACGTCACCTATGACTTGGGCCACTGGGGATACGCTGCATTGCTCGTTCTCCTATATGACCCGCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
f150b65cf0492aa1318511b3ca47027628f3337ba51c5dcdb157ddc3ba309b89
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8400
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genome analysis of a novel Pseudomonas aeruginosa phage O4 and identification of its receptor Zhang,F., Pan,X. and Yang,H. 2022-06-18 — GenBank