Protein

View in Explore
Genbank accession
WAK44874.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,55
TF
Evidence RBPdetect2
Probability 0,96
Protein sequence
MVAKVKRSTPATRAQRRQVVGHKGGGKKQKQPSIASNSVPSISTARLVYLWSWGPIVGPVSGLRSVKLDGTPIIAEDGTINYPGVKWQFRSGELHQDRLEGVTESSNEIRVGLELRSTVPWVYSINNAVIDAVRVRFSWPVLQAQDSGGNINGVHIAYAIDVATDGGPYQQVLASSVDRKNVTKYERSHRIELPAGSRWTIRARRLTPEANSSLVQDAMVVEAIAEVVNSDQEYPLTAVGCIEYDAQQFGGDFPKIAALMRGRIVRVPMNYDPETRTYATSGAGTTNGVWDGSFKEAYTNNPAWVFYDLALHPYYGLGDRIDASMVNRWSLYRIAQWCDQLVPDGKGQGGMEPRFTCNLYLQKQAEAWAVLQDLAAIFHGLAYWDGSQITVNADIPQDPVYTYTPSQILGDGAIKYSGSRLRDRHSLAMVSFDDPDQGFDTDKEPVFDEDAMAEYGVRSVSVEAVGCTSRGQAQRAGKWALLTEQLQIRGATINVGLDGYIPKPGTVIALSDPMLAGRANGGRIAAVAGRTVTVDRDVEVPAGARLLVNLPSGKAEMRQVRSVSGRQITVMADFSEAPQSECGWAIDYDDLKLMQFYVRNVTRPEWTRFQLELIQHEPSKFDAIDHGTMIDDRPISVLPPGVQEAPARVLISSHSAVDQGIAVTTMTIGWDAAPGAVAYDVEWRWGSRDWTKVPRTGELAVDVRGVYAGQYLARVRAVNAMDVASIPTTSVLTDVAGKTTSPPAVTRLMASSELFGIGLKWGFPAGAEDTQRTEIWYGPGNSLEQASKLTDLAYPQSDYGLQGLAAGARFFFWARLVDRTGNIGPFYPAGSGVMGQASADAGPILDLIKEKVDESIISKELNERIDLVDGDGPGSVNDRINQAVKDITDALVYDPAKAYAKGDVVRLGQKIYQAQGPVAVGVAPPAEPWQDIATILEEAGALAGEVHQNTLDISELDGVVTAQAEKVDGVFVQLNPLYSGDTGSYAGDNTTSVGVWSVWSAIGEGDYAQGKRTDRVEAKVGENTAAITTLSQAVIDGDSALAEQITTVGVQVGENTAAVQAERQARIDADGVLGREISTVQTNLNGATAAIAENKEAIQDVDGKVSLTWSVRLQYTSATGEYKWAGVGLGLENGPGGLQSKFVIDADMFAIQQGGIVPFAVEGGQVFMRSAFIKDGSIDMLKIGSNLQSSNYVPNESGWAFLPDGTFQMMGNAPGGARLMINNKGLYVFHPNGEKAIDLSVDAT
Physico‐chemical
properties
protein length:1244 AA
molecular weight: 134094,98380 Da
isoelectric point:4,95309
aromaticity:0,07958
hydropathy:-0,20916

Domains

Domains [InterPro]
DC_0014
STR
1–1243
DC_0014
IPR053171
Unmapped
13–967
IPR053171 IPR015406
IPR055385
ATT
106–229
IPR055385 IPR032876 IPR036116
WAK44874.1
1 1244
Architecture
STR
ATT
STR
ATT
STR
STR 1-105 | ATT 106-229 | STR 230-362 | ATT 363-527 | STR 528-1243 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WAK44874.1
1 1244
Domain Start End Length (AA) Confidence
N-terminal 1 525 525 0,8877
Central domain 526 1185 661 0,0421
C-terminal 1186 1244 58 0,6992
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-525
Central
526-1185
C-terminal
1186-1244

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage PseuP_224
[NCBI] 		2996096 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Pseudomonas protegens
[NCBI] 		380021 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Pseudomonadales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WAK44874.1 [NCBI]
Genbank nucleotide accession
OP795451.1 [NCBI]
CDS location
range 35201 -> 38935
strand +
CDS
ATGGTCGCGAAAGTGAAGCGCAGCACGCCGGCCACTCGGGCGCAACGGCGCCAGGTCGTCGGGCATAAGGGTGGCGGCAAGAAGCAGAAGCAGCCGAGCATCGCCTCGAACAGCGTGCCTTCAATCTCGACCGCGCGCCTGGTCTACCTCTGGAGCTGGGGGCCTATCGTCGGCCCCGTGAGCGGATTGCGCTCGGTGAAGCTCGATGGGACGCCGATCATTGCCGAGGACGGCACGATTAACTACCCAGGTGTGAAGTGGCAGTTCCGGTCGGGAGAGCTGCACCAGGATCGCCTTGAGGGGGTTACCGAGTCGAGCAACGAGATCAGGGTCGGCCTGGAACTGCGTAGCACCGTACCGTGGGTTTACTCAATCAATAACGCCGTTATCGACGCCGTGCGCGTGCGGTTTTCTTGGCCGGTGCTGCAGGCCCAGGATAGTGGCGGCAACATCAACGGCGTGCATATCGCTTATGCGATTGACGTGGCCACGGATGGCGGTCCCTACCAGCAGGTGCTGGCGTCAAGCGTTGACCGCAAGAACGTCACCAAGTACGAGCGATCGCACCGTATTGAGTTGCCCGCGGGCAGCAGGTGGACTATCCGTGCGCGCCGCTTGACACCAGAGGCGAACAGTTCGCTGGTGCAGGACGCCATGGTCGTTGAGGCGATCGCCGAGGTCGTCAACAGCGACCAGGAGTATCCACTCACGGCGGTCGGCTGCATCGAATACGACGCCCAACAGTTCGGCGGGGACTTCCCGAAGATTGCGGCCCTGATGCGCGGCAGAATCGTGCGAGTGCCGATGAACTACGACCCAGAGACGCGCACCTATGCCACCTCCGGCGCCGGCACCACCAACGGCGTGTGGGATGGCTCGTTCAAGGAGGCTTACACCAACAACCCGGCCTGGGTGTTCTACGACCTGGCTCTGCATCCGTACTACGGCCTGGGCGATCGTATCGACGCCTCGATGGTCAATCGCTGGTCGCTGTACCGCATCGCCCAGTGGTGCGACCAGTTGGTGCCGGACGGGAAAGGCCAGGGGGGCATGGAGCCGCGTTTCACCTGCAACCTCTACCTGCAGAAGCAGGCCGAGGCCTGGGCGGTGCTGCAGGACCTGGCCGCGATCTTCCACGGGTTGGCGTACTGGGATGGCAGCCAGATCACCGTCAATGCTGACATTCCGCAGGACCCGGTCTACACCTACACGCCGTCACAGATTCTCGGAGACGGGGCGATCAAGTATTCCGGCAGCAGGTTGCGCGACAGGCACAGCCTCGCCATGGTCTCGTTCGATGATCCTGATCAGGGGTTCGATACCGACAAGGAGCCGGTATTCGATGAGGACGCCATGGCCGAGTACGGCGTGCGAAGCGTTTCTGTTGAGGCGGTGGGCTGCACCAGCCGTGGCCAGGCCCAGCGCGCGGGAAAGTGGGCGCTGCTGACTGAGCAGCTGCAGATCCGCGGCGCGACGATCAACGTTGGCCTAGATGGCTATATCCCGAAGCCTGGAACCGTGATTGCGCTGTCCGATCCAATGCTGGCCGGCAGGGCCAACGGCGGCCGGATTGCTGCCGTCGCTGGCCGCACCGTGACCGTTGACCGTGACGTGGAAGTTCCCGCCGGCGCCCGGCTGCTGGTTAACCTGCCCAGTGGCAAGGCCGAGATGCGGCAAGTTCGCTCGGTGAGCGGGCGGCAGATCACCGTCATGGCCGACTTCAGCGAGGCCCCGCAATCCGAATGCGGCTGGGCGATCGACTACGACGACTTGAAGCTGATGCAGTTCTACGTCCGCAACGTGACGCGGCCAGAGTGGACTCGGTTCCAACTCGAGCTGATCCAGCATGAGCCCAGCAAGTTCGACGCCATCGATCACGGCACCATGATCGACGACCGGCCAATCAGCGTTTTGCCGCCTGGCGTGCAAGAGGCTCCGGCCCGCGTACTGATCAGCAGCCACTCCGCTGTAGACCAGGGCATTGCAGTTACCACCATGACCATCGGGTGGGATGCTGCGCCTGGTGCTGTGGCGTACGACGTGGAATGGCGCTGGGGCTCCCGTGACTGGACCAAGGTGCCGCGCACCGGTGAGCTCGCCGTCGACGTGCGTGGAGTGTATGCAGGCCAGTACCTGGCCCGCGTGCGAGCCGTCAACGCAATGGATGTGGCATCTATCCCCACAACGTCGGTACTCACTGATGTCGCGGGCAAGACCACGTCACCACCAGCGGTGACGCGCCTCATGGCATCGAGTGAGCTGTTTGGCATCGGCCTCAAGTGGGGGTTCCCAGCAGGTGCCGAGGATACCCAGCGCACCGAGATCTGGTATGGCCCAGGCAACAGCCTGGAGCAGGCCAGCAAGCTGACAGACCTGGCCTATCCGCAGTCCGACTACGGCCTGCAGGGGCTGGCGGCGGGTGCTCGGTTCTTCTTCTGGGCTCGCCTGGTGGACCGGACCGGCAACATTGGGCCGTTTTACCCGGCGGGGAGCGGGGTTATGGGCCAGGCGAGCGCTGATGCCGGCCCGATCCTTGACCTGATTAAGGAGAAGGTCGACGAAAGCATCATCAGCAAGGAGCTGAACGAGCGAATCGACCTAGTCGATGGCGACGGGCCTGGGTCAGTCAACGACCGGATCAATCAGGCGGTCAAGGACATCACTGATGCCCTCGTCTATGACCCGGCCAAGGCCTACGCAAAAGGCGATGTTGTGCGCCTGGGGCAGAAGATCTACCAGGCCCAAGGCCCTGTGGCCGTGGGAGTGGCGCCGCCTGCGGAACCATGGCAAGACATCGCCACCATCCTTGAAGAGGCCGGCGCATTGGCTGGTGAAGTGCACCAGAACACACTGGATATTTCTGAGCTGGACGGCGTTGTCACTGCGCAAGCGGAGAAGGTGGACGGGGTGTTTGTACAGCTCAACCCGCTGTACTCCGGCGATACCGGCAGCTATGCGGGCGACAACACCACCAGCGTCGGAGTCTGGTCGGTGTGGTCCGCCATCGGCGAGGGCGACTACGCCCAGGGCAAGCGAACTGACCGAGTTGAGGCCAAGGTTGGAGAGAACACGGCGGCTATCACTACGCTGTCGCAGGCCGTCATTGATGGTGACAGTGCCCTTGCAGAGCAGATCACCACCGTCGGCGTTCAGGTAGGGGAGAACACCGCAGCGGTTCAGGCAGAGCGCCAGGCACGGATCGATGCCGACGGCGTTCTGGGGCGCGAGATCAGTACCGTGCAGACGAACCTCAACGGCGCGACCGCGGCGATCGCAGAGAACAAAGAGGCGATCCAAGATGTTGACGGGAAGGTCTCGCTGACTTGGTCGGTTCGCTTGCAGTACACATCAGCAACTGGTGAGTACAAGTGGGCAGGCGTCGGGCTCGGTCTTGAAAACGGGCCAGGGGGATTGCAATCCAAGTTCGTCATTGATGCCGATATGTTTGCCATTCAACAAGGCGGCATCGTGCCGTTCGCTGTTGAAGGGGGGCAGGTGTTTATGCGCTCTGCATTTATTAAGGATGGGTCAATCGACATGCTCAAGATCGGCAGTAACTTGCAGTCGAGCAACTATGTCCCTAATGAGTCGGGGTGGGCGTTCTTACCGGATGGAACCTTCCAGATGATGGGTAATGCCCCTGGAGGCGCAAGGCTCATGATCAATAACAAAGGGCTGTATGTGTTCCATCCGAATGGCGAAAAAGCCATCGACTTGAGCGTGGATGCGACATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
1816ac69aef2825ab9533a8167d6238bb45775e8f24e6fe3f7218a1771ee8f06
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7499
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Identification, Characterization, and Genome Analysis of Two Novel Temperate Pseudomonas protegens Phages PseuP_222 and PseuP_224 Morozova,V., Kozlova,Y., Tikunov,A., Babkin,I., Ushakova,T., Bardasheva,A., Jdeed,G., Zhirakovskaya,E., Mogileva,A., Netesov,S. and Tikunova,N. 2023 37374958 GenBank