Protein

View in Explore
Genbank accession
AWD90215.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TF
Evidence RBPdetect
Probability 0,90
TF
Evidence RBPdetect2
Probability 0,94
Protein sequence
MAWNRGTATFTSGSNIVKRVTGPAWSEPLNGVSVGREIRDSDGIPYEIIRVDDDDTIAIYSNYSGATGNQDYAIPTSPGISVESMALQHAKFITWLKQLFAAWQQLTIGEGVVTITDPVTGESVQINSVSEWNEILETKIGITGDYTITGAKNFTGTINVPDSPAGDSSGKAANTKFVTSALLSSAGELSESIDEINSSITTISSDVNTAKSDITTIKGNVTANTTAINNNAHDIGVVSTFATDTETRVKATETAIATKASKGANADITSLSGLTTPLSVAQGGTGGNTQAAARTGLGLGGAAVLSVGTAAGTVAAGNDGRFGTLEGKTGGTVRSEVVVNGVVHGNTFRPNSLSTEESGNTRSIGINFADVVPLAATIEYYLVAGQYHSLRMLIDSATYSFRGTGVATAVSWQSTSDSRLKEEQEEITDSLSKLMQLTGKTYKLYGMEMAGLIAQDVDKVMPEAVAKLGEAKLPDGSTIYDALALDYNAITALHVNATKEIAKELVELKILVEGLTSN
Physico‐chemical
properties
protein length:518 AA
molecular weight: 54033,49710 Da
isoelectric point:4,72135
aromaticity:0,05598
hydropathy:-0,08649

Domains

Domains [InterPro]
DC_1202
STR
5–518
DC_1202
G3DSA:1.20.5.340
STR
163–274
G3DSA:1.20.5.340 IPR030392
IPR030392
CHP
416–512
IPR030392
Coil
Unmapped
420–440
Coil
AWD90215.1
1 518
Architecture
STR
STR 5-518
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Dickeya phage Sucellus
[NCBI] 		2163632 No lineage information
Host Dickeya dadantii
[NCBI] 		204038 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AWD90215.1 [NCBI]
Genbank nucleotide accession
MH059634.1 [NCBI]
CDS location
range 14276 -> 15832
strand -
CDS
ATGGCTTGGAATAGAGGAACGGCAACGTTCACAAGCGGCAGTAATATAGTAAAAAGAGTCACTGGCCCGGCTTGGTCTGAGCCGCTAAACGGTGTTTCTGTTGGTCGTGAAATAAGGGATTCTGATGGAATTCCATATGAAATAATCAGGGTTGACGATGATGACACAATTGCCATTTACAGCAATTATTCAGGCGCAACTGGAAATCAAGATTATGCTATCCCGACATCACCCGGAATTAGCGTTGAGTCAATGGCGTTACAGCACGCCAAATTTATAACTTGGCTTAAGCAGTTATTTGCAGCGTGGCAACAATTAACAATCGGAGAAGGTGTTGTTACAATAACAGACCCAGTTACAGGTGAATCAGTTCAGATAAATTCAGTATCTGAATGGAATGAAATTCTTGAAACAAAAATTGGAATTACTGGAGATTATACAATAACAGGGGCGAAGAATTTCACAGGAACAATTAATGTACCTGACTCACCTGCTGGTGATTCGTCAGGGAAAGCGGCCAACACAAAATTCGTAACATCAGCATTGCTCTCATCAGCTGGAGAGTTAAGTGAATCAATTGATGAAATAAACTCGTCTATAACAACAATATCATCCGACGTTAATACAGCCAAATCAGATATAACAACAATAAAAGGTAATGTCACAGCTAACACCACAGCGATAAACAATAATGCGCATGATATAGGCGTGGTTAGCACGTTTGCAACAGATACAGAAACGCGAGTTAAGGCCACCGAGACGGCGATAGCGACGAAAGCCAGCAAGGGGGCTAATGCTGATATCACGTCATTGTCCGGACTTACTACGCCCCTGTCTGTAGCGCAGGGCGGCACTGGCGGTAACACGCAGGCGGCGGCGCGGACAGGGCTTGGTCTTGGCGGCGCGGCGGTGCTTAGCGTCGGGACTGCGGCCGGCACCGTTGCCGCCGGGAATGATGGACGATTCGGCACGCTGGAGGGCAAAACTGGCGGAACAGTCAGATCCGAAGTTGTGGTAAATGGCGTTGTACATGGAAACACATTCCGGCCAAATTCATTATCAACCGAGGAAAGTGGCAACACTCGCTCTATTGGCATTAACTTCGCTGACGTCGTTCCGCTCGCAGCTACTATCGAATATTATCTTGTTGCAGGTCAATACCATTCGCTGAGAATGCTTATTGACAGCGCAACATATTCTTTCAGAGGGACCGGCGTGGCAACGGCGGTGTCATGGCAAAGCACGTCTGACTCTAGACTAAAAGAGGAGCAGGAAGAGATAACTGACTCACTGTCAAAGTTGATGCAACTTACTGGCAAGACTTATAAATTGTACGGGATGGAGATGGCAGGACTGATAGCTCAGGACGTAGATAAAGTAATGCCTGAGGCCGTGGCTAAGCTGGGAGAAGCTAAGCTACCAGATGGCTCTACTATCTATGATGCGCTAGCGCTTGACTATAATGCGATAACCGCTCTGCACGTCAACGCAACTAAAGAGATAGCAAAAGAGCTGGTTGAACTAAAAATTTTAGTAGAGGGGTTGACGTCAAACTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
1a241c23d1ec8e0d53a6c4c50b5c20757370a85e03f4176b4d2d66c830f8ff57
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7848
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Phage therapy in agriculture - a green tech approach to combat plant pathogenic bacteria Carstens,A.B., Djurhuus,A.M. and Hansen,L.H. 2021 — GenBank