Protein

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Genbank accession
AII27499.1 [GenBank]
Protein name
constituent protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MAYQVYKVEKPKGVNFSLEPSQLDSTMWDEANEVSFKHGKTKKVSGYEQGLGQTGVLNDGSVYPEIILPLRDDTDENYWWAYASTKQDGTGEIYRIVTKDLHQDVTPTAGVPNEPEFRWFGDTINGVPYFMKGKPYVWDGVSKFEELETFPGHVKAQVMRTYGNHMVAMDFKVDNFTPPADPQTPEEEYQAKFSPWNEGRHRSAVWWSSAINTKDLSVSWADADPTTESGWNFLGGNGGPILGGKSLRESFIIYRERAVWQMSYIGGILVFAFKELFNDVGVLGPDCVAEIDGYHFVVGQSDIYMHNGVHKESVADGIVRNRIFDSIDPDHIDKVFVAIRYQEKEAWVCIPEASTNTNGRCNVAYVYNWEERHWSKRDMPDSLTSTYTILSITEGDITWTAPSESATWEEATDTWISSYFKYNSSQWGLAFAGVTSDGKGAVYTTIDEPTWDGANFKASVEKKWIDMEDYTTTKTLNKIWPLVRGGEIDVWVAGSETTTQSPAWRYVGRFDPNKRANLGCTATGKFIHVKFEIPEKSRAELRGYWLEYKATGAR
Physico‐chemical
properties
protein length:554 AA
molecular weight: 62751,16080 Da
isoelectric point:5,02828
aromaticity:0,13357
hydropathy:-0,53051

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AII27499.1
1 554
Domain Start End Length (AA) Confidence
N-terminal 1 60 60 0,9889
Central domain 61 259 200 0,2621
C-terminal 260 554 294 0,5716
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-60
Central
61-259
C-terminal
260-554

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage VPp1
[NCBI] 		1524880 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Vibrio parahaemolyticus
[NCBI] 		670 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AII27499.1 [NCBI]
Genbank nucleotide accession
KJ936628 [NCBI]
CDS location
range 15726 -> 17390
strand -
CDS
ATGGCATACCAAGTTTATAAAGTTGAGAAACCAAAAGGTGTCAACTTTTCACTAGAGCCATCACAATTAGATTCTACTATGTGGGACGAGGCTAATGAAGTCTCGTTTAAGCATGGTAAGACTAAGAAGGTATCTGGTTATGAACAAGGCTTAGGTCAGACTGGTGTTCTTAATGATGGTTCGGTATATCCTGAAATTATCCTCCCATTGCGTGATGATACTGATGAGAACTACTGGTGGGCTTATGCCTCAACCAAACAAGATGGTACTGGTGAAATCTACCGTATCGTCACTAAAGACTTACACCAAGATGTTACACCAACAGCAGGAGTTCCAAATGAACCTGAGTTCCGATGGTTTGGTGATACAATCAATGGCGTTCCGTACTTCATGAAAGGTAAGCCTTACGTGTGGGATGGAGTAAGTAAATTTGAAGAACTAGAAACATTCCCCGGACATGTTAAGGCTCAGGTTATGCGAACCTACGGCAATCACATGGTGGCAATGGACTTCAAGGTAGATAACTTCACACCTCCGGCTGACCCACAAACGCCAGAAGAAGAATACCAAGCGAAGTTCAGTCCTTGGAACGAGGGACGTCACCGCTCTGCTGTATGGTGGTCTAGTGCTATCAACACAAAAGACTTAAGTGTTTCTTGGGCAGATGCAGACCCAACTACAGAGTCCGGTTGGAACTTTCTAGGCGGTAATGGTGGACCGATTCTTGGAGGTAAATCCCTTCGAGAGTCGTTCATCATTTACCGTGAACGTGCAGTATGGCAGATGTCATACATTGGCGGTATCTTAGTATTCGCCTTTAAGGAATTGTTTAACGACGTAGGTGTACTTGGTCCAGACTGTGTGGCTGAGATTGATGGTTACCACTTTGTGGTTGGTCAATCAGACATCTATATGCATAATGGTGTACATAAAGAATCTGTAGCAGATGGTATTGTACGTAACAGAATCTTTGACTCTATTGACCCAGACCATATCGACAAGGTATTCGTAGCTATACGTTACCAAGAGAAAGAGGCATGGGTATGTATTCCAGAAGCATCAACAAACACTAATGGTCGTTGTAACGTAGCATACGTATATAACTGGGAAGAACGTCACTGGTCTAAACGAGACATGCCAGATTCATTGACTTCTACTTACACTATCCTATCTATTACAGAGGGTGATATTACATGGACAGCACCATCAGAAAGCGCTACATGGGAAGAAGCCACTGATACATGGATTAGTTCATACTTTAAGTATAACAGCTCACAGTGGGGCTTAGCGTTCGCTGGTGTTACCTCAGATGGTAAGGGTGCTGTATATACAACTATTGATGAACCAACTTGGGATGGTGCTAACTTTAAAGCTAGTGTAGAGAAGAAATGGATTGACATGGAAGACTATACAACCACTAAGACACTCAATAAGATTTGGCCTCTCGTTCGGGGTGGTGAGATTGATGTGTGGGTAGCTGGTAGTGAGACAACTACACAGTCTCCAGCTTGGAGATATGTTGGTAGGTTTGACCCTAACAAACGAGCTAACCTAGGTTGTACAGCAACTGGTAAGTTCATTCACGTTAAGTTTGAAATCCCAGAGAAGAGTCGTGCAGAATTGCGTGGCTATTGGCTAGAATATAAAGCAACAGGAGCTAGATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
ee8ab5c2d1e8e2b86c0a9aaa921ba5cafddd3c677b2a9db5d0707c02d0921ebf
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8453
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50