Protein

View in Explore
Genbank accession
XQQ55854.1 [GenBank]
Protein name
tail spike protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,85
Protein sequence
MGMDLQYQKNCNSQHDVVFLGDMSIYPVIKNLTVENTNNRSFGIAFTNYHASIFASQAVVENNLTIKNFYNGIRHACSYLFVAGLTLDNCEYGLYAFRKSDTCLDAFVNIKNCGTGIAVYNGSEVVAQGVTFANNTTDCNISYNTSTTNGTIWK
Physico‐chemical
properties
protein length:154 AA
molecular weight: 17035,89860 Da
isoelectric point:5,81681
aromaticity:0,12338
hydropathy:-0,08831

Domains

Domains [InterPro]
DC_0378
STR
4–154
DC_0378
IPR012334
STR
8–153
IPR012334
IPR011050
STR
26–150
IPR011050
XQQ55854.1
1 154
Architecture
STR
STR 4-154
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XQQ55854.1
1 154
Domain Start End Length (AA) Confidence
N-terminal 1 10 10 0,0373
Central domain 11 143 134 0,9819
C-terminal 144 154 10 0,4455
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-10
Central
11-143
C-terminal
144-154

Taxonomy

  Name Taxonomy ID Lineage
Phage Campylobacter phage PT14_12670_16
[NCBI] 		3410872 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Campylobacter jejuni
[NCBI] 		197 cellular organisms > Bacteria > Pseudomonadati > Campylobacterota > Epsilonproteobacteria > Campylobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XQQ55854.1 [NCBI]
Genbank nucleotide accession
PV052266.1 [NCBI]
CDS location
range 71846 -> 72310
strand -
CDS
ATGGGAATGGATTTACAATATCAAAAAAATTGCAATTCACAACATGATGTTGTATTTTTAGGTGATATGTCTATTTACCCTGTAATTAAAAATCTAACTGTTGAAAATACAAATAACAGGAGTTTTGGTATAGCATTTACCAATTATCATGCATCCATATTCGCATCACAAGCAGTTGTAGAAAATAACTTAACTATAAAGAATTTTTATAATGGTATTAGACATGCATGTTCATATTTATTTGTGGCAGGATTAACTTTAGATAATTGTGAATATGGATTATATGCATTTAGGAAATCAGATACTTGTTTAGATGCCTTTGTAAATATTAAAAATTGTGGAACTGGCATAGCTGTTTATAATGGTTCAGAAGTTGTAGCACAAGGCGTTACTTTTGCTAACAATACTACAGATTGTAATATAAGTTATAATACATCAACTACAAATGGAACTATTTGGAAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
b53ae288bc9b2349c1d56c6aeaacecb33ebbeef33853e1dc9dfe4c36b9b67e18
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6421
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Campylobacter and Salmonella phages isolated in the United Kingdom Mutai,I.J., Gurusinghe,A., Clarke,M., Wang,B., Connerton,P. and Bhandare,S.G. 2021-12-15 — GenBank