Protein

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Genbank accession
WDS30391.1 [GenBank]
Protein name
non-contractile tail tubular protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MARPFEGALNDLLQGVSQQVPRERVAGQCSAQVNMLSDPVTGIRRRPGSLFVSVHDFGPIGEGDALYTQYLERGADGRHLVINTNTGGWWLLDREAKNIVSEGNLSYLLATDRRSIQTTSMGGITYILNTEKRPSATTDNSDKKDPKTTGFYFVKSGAFSKEYDLSVVWSLGSQTVTYTTPDGTTAGDADQSVPEAIARKLVEKLIAVGVDFAVRVGPYIYFELITGTDLKITSTSGSPYVGYSNQSQVNLETDLPARMHPSADGALCAVGQSERALVWYRYSADKGVWLESGDYNSVTAISVDVPYKIVDDNMEQHIMEGRLAGDDLTNPAPTFLEERRITGIGTFQGRLVLLSGAYVCMSATGEPDRFFRSTVSSLDPTDRIDIASGSAQNSVFRQALQFNKDLILLGDSTQAVVPSLQQLLAPDNASVVLTSDLACNAFVAPVTTSQTLMYPAPRSEAFSAVLELVPSQYTSSQYVSQDVTTHIPRYIEGEARFMQSASAANIVLMATAGDNRQVIAHEYHFTNQGKVHQAWHKWLFPYRVASLHFARDRVVLFAADDAGSTDKITISTIDPKQGGVTFDVDRLPHLDAMSRVPITTEGKGIVPIYMRPWVAEGKLTGAVATGARASEEVAIDVDEITWEFTVEPGSTHEEIYLGFRYESLFAPTPPMLKDQNDTLISTAPVRLLRYELTTRNTGEFDVRIVDPSIGLDYSDSTTSLVFGTDSVQPDMALIADLARVPVPCRSNAQSTEMYLSTDGTQDMNILEIEYIIRYNQRRRRV
Physico‐chemical
properties
protein length:781 AA
molecular weight: 85772,30690 Da
isoelectric point:4,93848
aromaticity:0,08451
hydropathy:-0,21229

Domains

Domains [InterPro]
DC_0058
STR
1–781
DC_0058
IPR058003
TTP
9–781
IPR058003
WDS30391.1
1 781
Architecture
STR
STR 1-781
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WDS30391.1
1 781
Domain Start End Length (AA) Confidence
N-terminal 1 140 140 0,9915
Central domain 141 339 200 0,0591
C-terminal 340 781 441 0,2245
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-140
Central
141-339
C-terminal
340-781

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage SSJ01
[NCBI] 		2973488 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Vibrio parahaemolyticus
[NCBI] 		670 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WDS30391.1 [NCBI]
Genbank nucleotide accession
OP117450 [NCBI]
CDS location
range 1095 -> 3440
strand -
CDS
ATGGCTCGACCATTTGAGGGTGCATTGAATGACCTGCTGCAAGGTGTGTCCCAACAAGTTCCACGTGAGCGTGTGGCTGGACAATGCTCTGCGCAGGTTAATATGCTGTCCGACCCAGTAACAGGCATCCGTCGTCGTCCCGGTAGCCTGTTCGTGAGTGTGCACGATTTCGGCCCGATTGGTGAGGGTGACGCGCTGTACACGCAGTATCTCGAACGAGGTGCTGATGGACGACACTTGGTAATTAACACCAACACAGGTGGCTGGTGGCTCTTAGACCGTGAGGCTAAGAACATCGTGAGTGAGGGCAACTTGTCTTACCTCCTAGCGACTGACCGTCGTAGTATCCAGACTACCAGTATGGGTGGTATCACGTACATTCTTAACACTGAGAAACGTCCGTCTGCAACGACTGACAACTCTGACAAGAAAGACCCGAAGACAACAGGTTTCTACTTCGTCAAGAGTGGTGCGTTCAGTAAAGAGTACGACCTGTCCGTAGTGTGGTCGCTCGGTAGCCAAACCGTGACGTACACTACACCTGACGGTACAACAGCAGGTGACGCAGACCAGTCTGTACCAGAAGCAATTGCACGTAAACTGGTTGAGAAGTTAATTGCTGTGGGTGTGGACTTCGCTGTGCGTGTTGGCCCGTACATTTACTTTGAGCTAATCACAGGTACTGACCTTAAAATCACAAGTACATCTGGTTCGCCTTACGTTGGCTACTCAAACCAATCACAGGTAAACCTAGAGACTGACCTCCCTGCGCGTATGCACCCATCTGCTGATGGTGCACTGTGTGCTGTAGGTCAATCAGAGCGTGCACTTGTGTGGTATCGTTACAGTGCCGACAAAGGCGTGTGGTTGGAATCTGGTGACTACAACTCTGTGACCGCTATCAGCGTGGATGTGCCCTATAAGATTGTCGATGACAATATGGAGCAACATATCATGGAGGGGCGTCTCGCAGGTGATGACTTGACTAACCCTGCACCGACATTCCTTGAAGAACGCCGCATCACTGGTATCGGTACGTTCCAAGGTCGTCTAGTGCTTCTATCTGGTGCGTACGTCTGTATGAGTGCCACTGGCGAACCAGACCGTTTCTTCCGCTCTACCGTGAGTTCCCTTGACCCAACAGACCGTATTGATATTGCATCCGGTTCAGCTCAGAACTCAGTGTTCCGCCAAGCGTTGCAGTTCAACAAGGACTTGATTCTACTTGGTGACAGCACACAGGCGGTAGTACCGTCCCTGCAACAGTTACTTGCACCTGATAACGCAAGCGTGGTGTTGACCTCAGATTTGGCCTGTAATGCGTTTGTAGCACCTGTTACAACCTCACAGACCCTGATGTACCCTGCACCTCGAAGCGAAGCATTCAGCGCAGTTTTGGAGCTTGTACCATCGCAATACACATCGTCTCAGTACGTATCTCAAGACGTTACGACGCACATCCCACGTTACATCGAGGGTGAGGCCCGTTTCATGCAGAGTGCTAGTGCTGCGAACATCGTGCTAATGGCAACCGCTGGCGACAACCGTCAAGTGATTGCACATGAGTACCACTTCACGAACCAAGGTAAAGTACACCAAGCATGGCATAAATGGCTCTTTCCATACCGTGTCGCTAGTTTGCACTTTGCTCGTGACCGTGTTGTGTTGTTTGCCGCAGATGACGCTGGTAGTACCGACAAAATCACTATCTCGACCATCGACCCTAAACAGGGTGGTGTGACGTTTGATGTTGACCGATTACCACACTTAGATGCAATGAGCCGTGTGCCTATTACAACTGAGGGTAAAGGTATCGTGCCAATCTATATGCGTCCTTGGGTAGCTGAGGGCAAGCTCACTGGTGCTGTGGCTACTGGTGCACGTGCCTCTGAGGAAGTGGCTATTGACGTAGACGAAATTACTTGGGAGTTCACTGTTGAGCCGGGTTCAACTCACGAAGAAATCTATCTAGGTTTCCGCTATGAGTCTCTGTTCGCACCTACACCACCAATGCTGAAAGACCAGAACGATACATTAATCAGTACCGCTCCGGTTCGTCTGTTGCGTTACGAGTTAACAACTCGAAATACTGGTGAGTTCGATGTACGCATCGTTGACCCAAGTATCGGATTGGATTACTCAGATAGCACAACTAGCCTTGTGTTTGGTACTGATAGCGTTCAGCCAGACATGGCGTTAATTGCTGACCTAGCGCGTGTCCCTGTACCGTGTCGAAGCAATGCGCAGTCTACTGAAATGTACTTGAGTACTGACGGTACACAGGATATGAACATTCTGGAAATTGAATATATCATTCGTTACAACCAACGCCGACGTCGCGTATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
5fb488c9e269f1767246f2121fb977baf518a8eccb48bf2026d806b155d7d361
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2948
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50