Protein

View in Explore

Genbank accession

XDJ15408.1 [GenBank]

Protein name

central tail fiber J

RBP type

Evidence Phold

Probability 1,00

Evidence RBPdetect2

Probability 0,93

Protein sequence

MPVAIIVGVVAAAGAAAAGAAIATVALVATMAMTLTTLFTVKVPGASGDNYKSSQERKQVLRAAAAAKIVSYGTTKSSGLLFFGEEEPGEQEDGEWLHLCLALCGHEIDGISEVYLGDDLAGTFGDSVSWELLNNPSEVSQFLLDNCPSWRDDMIGRGIAWVRLSLKFDSEKFPSGLPNAMFVKRGKKVFDPRINQEIFTNNAALIILDYERSVCKVKDENVNWDEWIEAANISDNIVTNADGTTSKRYTIDGDFDIDESRTQVLTAMFQACGGEPTFRGGKHGIMVGAYYGPATMTLDESMIIGDIKILPEPNYKEKVNTVTGKYISVEQGYVEADFPKIVIDEWLEEDGNEFNFDVNYRFVNNAYTAQRLAMMTVRRKRQARTIEIPVNFKGYGMRPGRNIILNIPAIGLNNQEYRVTKWTFTADGGLNITVRLDFAELYDDAVGTVVEVPPTINLNKGRPNQPTNVTYTVEKIGEVVQGILSWENYGEFTYNQVLIKQNGEMITSAQVPGSSVRLNGLVRGTYTAHVFAVNAIGARSQEAFLEFTINAPAKPLSVNVTSGYYSITLDPVSGANADVSTQFEFWTSGQTKLASTSTAFVEANANRQGMGNSWTKNDLLLQVTYYWYVRAINAYGTSDFLEVEAICDTDISDILDQATQEVINSPEFQQMQNGVAENTQDIEEQHQQLQQQAAELQAQAATINQHGVSISQNAQDILAEAQARANADSSLNTQIINVQTQVSDLDQSVTEELTLIKSQLGNETFEAYKIWNFDNDTESFTASGDLAHTSQGTIQLTPINGDPYFSSPVFSAVNGGLYPYVSFRARRVSGTQGPWGGQMHFADSTHGFDSSYIGTFSRPSNDTEWNVFSVEMPDSWKASTTINRIRPDITQNPTEIWEIDWIAIGRRSVGTSVEAVNSLRATVTAQGDTITAQGSAITGLTNSLNNTNSNVTANTSAINTLQTTVTQQGSTITSQGSAITALQAGLQSTNNNVAAQGTALTALTTRVSNAENSIVSQNEALTSLNSSLVGIINQGDAINVNPRFTADLLGWRYGAGATSNSWNATAGDGKSGVILNRTSTQAQYIGTQWCPTEAGRIYRMTIRAKTISGAGNILFRRHQRILNTDNDANYQDITLVYGTEFETKSATFAAISANMSQVEFSIYAYPNTTQVAIDSVIIEDVTDAIAINSTATALNSLTTRVSSAEGTITSQGQALTSLTNTVNTLSGTVSGQATAINNLQSTVTQQGNSITSQGSAITALNNSLSGINSRGANLVDDSSFEAYSVTSGVLRTASGNAKTGSKSAQVVCVGATGNNDFVCGTRFRVSEGRVFYVELWARTDPNTAVAINQAARFNFGLWSQVSSSNTWTIAATVILSNLTSTYAKFSGYVRIPAGFTTTQFWGSIPSGSNNQNSSILIDDVFVQDVTEGFDAAATANANSSAISALQSTVSQQGNTISSHSSSITSLNNSVTTAQNTANGANNTANAANTKADANASALSSLTNRVTSAEGTITSQGSSITSLQNSITDIYKQGDNLILNGDFSNGLTNWSGYGSNVVYNATVGEGGTPGVTMTKTDALNPQIFSNNTNWSSINTASGTRTIRIAVRAKGVSGACNLMLRIWRRGSDGGAASSDSPILTFSTLAFETKYVDFNISNPQVRAGVYCYNQNAVVIVSEVSMYDVTDTVTNSANASAISTLNTTVSNQGGQITANANALTSLTSTVNGHTASIQTISSTTSGLNNTVNALYTVRVSTSGSNSYVAGMQLGANNAGSFAAFLTDQFRISQSIGGAVQTVFQIVNGQTQMASALIGDATITSAKIADNIQSSGFGVSGQGGWRISKSTNAFEVDDNNNVIRFRAGKLS

Physico‐chemical properties

protein length:	1862 AA
molecular weight:	198920,50960 Da
isoelectric point:	4,78564
aromaticity:	0,07841
hydropathy:	-0,18743

Domains

Domains [InterPro]

DC_0187
STR
1–800

DC_0187 G3DSA:1.20.5.340 IPR008979 G3DSA:2.60.120.260 G3DSA:1.20.5.340 G3DSA:2.60.120.260 IPR015406

IPR036116
STR
463–643

IPR036116 IPR026202 G3DSA:2.60.120.260 G3DSA:1.20.5.340 DC_0338 DC_0515

IPR057587
ATT
554–657

IPR057587 Coil DC_0158 DC_0338

DC_0338
STR
947–1138

DC_0338

XDJ15408.1

1 1862

Architecture

STR

ATT

STR

RBD

STR 1-553 | ATT 554-657 | STR 658-1681 | RBD 1682-1862

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Domains [InterPro]

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
DC_0187	STR	DC_0187	1	800	Novel HMM	DC_0187	Central	Low	Positional only	466 proteins / 466 hits
IPR036116	STR	IPR036116	463	643	Merged direct domain	Fibronectin type III superfamily	Central	Low	Positional only	52 proteins / 52 hits
IPR057587	ATT	DC_0130	554	657	InterPro cluster	Tip attachment protein J, second Ig-like domain	Central	Medium	Text match	309 proteins / 309 hits
IPR026202	Unmapped	-	664	1029	InterPro	Golgin subfamily B member 1	-	-	-	-
Coil	Unmapped	-	675	706	Coils	Coil	-	-	-	-
DC_0158	STR	DC_0158	771	996	Novel HMM	DC_0158	Central	Low	Positional only	1 proteins / 1 hits
G3DSA:1.20.5.340	STR	G3DSA:1.20.5.340	943	1028	Merged direct domain	G3DSA:1.20.5.340	Central	Low	Positional only	38 proteins / 38 hits
DC_0338	STR	DC_0338	947	1138	Novel HMM	DC_0338	Central	Low	Positional only	38 proteins / 38 hits
IPR008979	STR	IPR008979	1035	1181	Merged direct domain	Galactose-binding-like domain superfamily	Central	Low	Positional only	24 proteins / 24 hits
G3DSA:2.60.120.260	STR	G3DSA:2.60.120.260	1038	1179	Merged direct domain	G3DSA:2.60.120.260	Central	Low	Positional only	264 proteins / 264 hits
DC_0338	STR	DC_0338	1117	1410	Novel HMM	DC_0338	Central	Low	Positional only	38 proteins / 38 hits
G3DSA:1.20.5.340	STR	G3DSA:1.20.5.340	1180	1253	Merged direct domain	G3DSA:1.20.5.340	Central	Low	Positional only	38 proteins / 38 hits
G3DSA:2.60.120.260	STR	G3DSA:2.60.120.260	1270	1424	Merged direct domain	G3DSA:2.60.120.260	Central	Low	Positional only	264 proteins / 264 hits
DC_0338	STR	DC_0338	1345	1639	Novel HMM	DC_0338	Central	Low	Positional only	38 proteins / 38 hits
G3DSA:1.20.5.340	STR	G3DSA:1.20.5.340	1425	1536	Merged direct domain	G3DSA:1.20.5.340	Central	Low	Positional only	38 proteins / 38 hits
G3DSA:2.60.120.260	STR	G3DSA:2.60.120.260	1537	1681	Merged direct domain	G3DSA:2.60.120.260	Central	Low	Positional only	264 proteins / 264 hits
DC_0515	RBD	DC_0515	1652	1862	Novel HMM	DC_0515	C-terminal	Low	Positional only	63 proteins / 63 hits
IPR015406	RBD	DC_0135	1729	1853	InterPro cluster	Tip attachment protein J, central straight fiber domain	C-terminal	High	Text match	1265 proteins / 1266 hits

Taxonomy

	Name	Taxonomy ID	Lineage
Phage	Brenneria phage vb_Bg_BREN6 [NCBI]	3236918	No lineage information
Host	Brenneria goodwinii [NCBI]	1109412	cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Genbank protein accession

XDJ15408.1 [NCBI]

Genbank nucleotide accession

PQ031257.1 [NCBI]

CDS location

range 868 -> 6456
strand +

CDS

ATGCCTGTAGCGATTATTGTAGGGGTTGTTGCAGCAGCAGGCGCAGCAGCAGCAGGCGCAGCAATAGCAACAGTTGCGTTAGTGGCAACAATGGCTATGACATTAACAACGCTCTTTACTGTGAAAGTTCCGGGAGCGTCGGGAGATAACTACAAAAGCTCTCAAGAAAGAAAACAAGTTCTAAGAGCCGCAGCCGCAGCGAAAATAGTTTCTTACGGAACTACAAAATCGAGCGGCCTTTTGTTTTTCGGTGAAGAAGAGCCAGGAGAACAAGAAGATGGCGAATGGCTTCATTTGTGCCTGGCATTGTGTGGGCATGAAATAGACGGCATTTCCGAAGTTTATTTGGGCGATGATTTGGCCGGGACTTTTGGAGATTCTGTAAGCTGGGAATTGCTAAACAACCCTTCCGAAGTTTCGCAATTCTTATTAGACAATTGTCCGAGCTGGCGCGATGATATGATTGGACGCGGCATTGCCTGGGTAAGACTTTCTTTAAAATTTGATTCCGAAAAGTTTCCTAGCGGATTGCCTAACGCAATGTTTGTTAAGCGTGGCAAAAAGGTTTTCGACCCAAGAATAAATCAAGAAATCTTTACTAACAACGCGGCTCTTATAATCTTAGATTATGAAAGAAGTGTGTGTAAAGTAAAAGATGAAAACGTAAATTGGGACGAATGGATAGAAGCCGCTAACATTTCGGACAATATCGTAACAAACGCGGACGGTACGACTTCAAAAAGATATACAATCGATGGCGACTTTGACATTGACGAATCCAGAACACAAGTTTTAACGGCAATGTTTCAAGCTTGTGGCGGCGAACCAACATTCAGGGGCGGCAAGCACGGGATTATGGTAGGCGCTTATTATGGCCCTGCTACAATGACATTAGATGAAAGCATGATTATTGGTGATATTAAAATATTGCCAGAACCAAATTATAAAGAAAAAGTAAATACAGTTACAGGAAAATACATTTCTGTAGAACAGGGATATGTAGAAGCTGATTTCCCTAAAATAGTAATTGACGAATGGTTAGAAGAAGACGGAAACGAATTTAATTTTGATGTAAATTACAGATTTGTAAACAACGCTTACACGGCACAACGGTTAGCAATGATGACCGTTAGACGCAAGCGCCAAGCAAGGACGATTGAAATTCCGGTAAATTTTAAAGGCTACGGAATGCGCCCCGGTCGGAATATTATTTTAAATATTCCGGCAATCGGGTTAAATAATCAAGAATATAGAGTTACTAAATGGACTTTTACAGCTGACGGCGGACTTAATATAACGGTAAGACTCGACTTCGCCGAACTTTACGACGACGCGGTAGGAACCGTTGTTGAAGTTCCTCCGACAATTAATTTAAATAAAGGTAGGCCAAATCAACCAACAAACGTCACATACACGGTTGAAAAAATAGGCGAGGTTGTTCAAGGAATCTTATCATGGGAAAATTACGGCGAATTTACATACAATCAAGTTTTAATAAAACAGAATGGAGAAATGATTACTTCGGCGCAAGTTCCAGGTTCTTCCGTGCGATTGAACGGTCTTGTGCGCGGAACTTATACGGCGCACGTATTCGCGGTAAACGCAATCGGGGCCAGGTCACAAGAAGCCTTTTTAGAATTTACAATAAACGCTCCTGCTAAGCCTTTATCTGTAAATGTAACATCAGGCTATTATTCAATTACATTAGACCCGGTTTCCGGCGCTAATGCTGACGTTTCTACACAATTCGAGTTTTGGACTTCTGGACAAACAAAACTTGCAAGCACTTCAACGGCGTTTGTCGAAGCCAATGCAAATCGTCAAGGAATGGGAAATTCTTGGACTAAAAACGATTTGCTCTTGCAAGTAACTTATTACTGGTACGTAAGAGCCATTAACGCTTACGGAACTTCCGACTTTTTAGAAGTTGAGGCAATTTGCGATACCGACATTAGCGACATATTAGATCAAGCAACGCAAGAAGTTATAAACAGCCCTGAATTTCAACAAATGCAAAACGGGGTTGCTGAAAATACACAAGACATTGAAGAACAGCATCAGCAATTGCAGCAACAAGCCGCTGAATTGCAAGCTCAAGCAGCAACTATAAATCAGCACGGTGTGAGCATATCTCAAAACGCACAAGACATTTTAGCCGAAGCGCAAGCAAGAGCAAATGCAGACTCTTCTTTAAATACTCAAATAATAAACGTTCAAACTCAAGTTAGCGATTTGGATCAATCTGTAACTGAAGAACTTACTTTAATAAAATCGCAATTGGGAAATGAAACTTTTGAAGCTTACAAAATATGGAATTTCGATAACGATACCGAAAGCTTTACTGCTAGCGGCGATTTAGCCCACACATCACAAGGCACTATTCAATTAACGCCTATTAACGGCGACCCGTATTTTTCAAGCCCTGTGTTTTCGGCAGTCAACGGCGGCTTATATCCGTATGTATCGTTCCGTGCGAGAAGAGTGTCGGGGACACAAGGGCCATGGGGCGGTCAAATGCATTTTGCGGATTCCACACACGGCTTTGATTCAAGCTATATCGGGACTTTCTCAAGACCTTCTAACGATACTGAGTGGAATGTTTTTTCGGTTGAAATGCCGGATAGCTGGAAAGCTTCAACGACAATAAACAGAATAAGACCTGATATAACGCAGAATCCAACTGAAATTTGGGAAATTGATTGGATTGCAATCGGACGCCGCAGTGTGGGAACTTCAGTCGAGGCTGTTAACTCATTGCGAGCAACCGTCACGGCGCAAGGAGACACGATAACCGCGCAAGGAAGTGCAATAACAGGACTTACCAACAGTCTTAATAATACGAATTCGAACGTAACGGCTAACACTTCCGCAATAAACACGTTGCAAACAACCGTTACACAACAAGGTTCAACAATTACAAGCCAAGGAAGCGCAATAACAGCTTTGCAAGCAGGATTGCAAAGCACAAATAACAACGTTGCGGCTCAAGGAACCGCTTTAACAGCATTAACGACAAGAGTGTCAAATGCCGAAAATAGCATAGTTTCTCAGAATGAAGCTTTAACTAGCTTGAATTCTAGTTTGGTAGGAATAATAAATCAGGGTGACGCAATTAACGTTAACCCAAGATTTACGGCCGATCTGCTGGGTTGGAGATACGGAGCTGGCGCAACATCTAATAGTTGGAACGCAACGGCCGGGGACGGTAAAAGCGGAGTTATCCTTAACAGAACATCAACTCAAGCACAATACATTGGAACTCAGTGGTGTCCAACTGAGGCAGGACGAATCTATCGTATGACGATTCGAGCTAAGACTATTAGCGGCGCTGGTAATATTTTATTTCGCAGACATCAACGAATATTAAATACAGATAACGACGCTAATTATCAAGACATAACTTTAGTCTATGGGACTGAATTTGAAACAAAATCCGCAACCTTTGCCGCTATTTCGGCAAACATGTCTCAAGTCGAATTTAGCATATACGCGTATCCTAATACTACTCAGGTAGCAATAGATAGTGTGATAATTGAAGACGTCACTGATGCAATTGCAATAAATTCAACTGCAACCGCACTTAATTCTTTAACAACGCGAGTTAGTTCGGCAGAAGGCACAATAACGTCTCAAGGACAAGCTTTAACTAGCCTGACTAACACTGTTAATACATTATCTGGTACTGTATCAGGTCAAGCAACAGCAATTAACAATTTGCAGTCTACCGTAACGCAGCAAGGAAATTCCATAACCAGCCAAGGAAGCGCAATAACGGCTTTAAATAACTCTTTATCGGGCATCAATTCTCGTGGTGCAAATCTAGTAGATGATAGTTCATTCGAAGCATATTCGGTAACATCCGGGGTGTTGAGGACAGCATCAGGGAATGCCAAAACAGGTAGTAAAAGTGCGCAAGTAGTTTGTGTCGGGGCTACAGGAAATAACGATTTTGTATGCGGTACGCGTTTCAGAGTTTCAGAAGGCCGGGTTTTTTATGTTGAATTATGGGCAAGAACCGACCCGAACACCGCAGTTGCGATAAACCAAGCGGCTAGATTTAATTTTGGCCTATGGTCTCAGGTTAGTTCATCTAATACATGGACTATTGCAGCTACCGTAATTTTAAGTAATTTAACTAGCACTTATGCAAAATTTAGCGGGTATGTTCGCATACCTGCCGGGTTCACCACAACTCAATTCTGGGGTTCTATTCCATCAGGTTCAAATAATCAAAATTCATCAATTTTGATTGATGATGTTTTTGTGCAAGACGTTACCGAAGGATTCGACGCGGCTGCTACTGCAAACGCCAACTCTTCTGCCATCTCTGCTTTACAAAGTACAGTTAGCCAGCAGGGAAATACGATAAGCAGCCATAGCAGTTCTATAACCAGTTTAAACAACTCCGTCACTACCGCGCAAAATACGGCCAATGGTGCTAACAATACAGCCAACGCGGCCAATACTAAAGCAGACGCCAACGCTAGCGCGTTAAGTTCGTTAACCAACAGAGTCACTAGCGCCGAAGGGACTATTACCTCGCAGGGTAGTTCGATAACTTCACTACAGAACTCGATTACCGATATCTATAAGCAGGGTGATAACTTAATTTTAAATGGAGATTTTTCCAACGGATTAACGAATTGGTCTGGATACGGTAGCAATGTGGTTTATAACGCAACGGTGGGAGAAGGTGGCACGCCAGGCGTCACAATGACAAAAACCGATGCTCTAAATCCGCAAATATTTTCAAATAATACAAATTGGTCATCAATAAATACAGCTTCAGGAACTAGGACTATTAGAATTGCAGTAAGAGCCAAAGGCGTTAGTGGTGCGTGTAACTTAATGCTTAGAATTTGGCGAAGAGGTTCGGACGGCGGGGCGGCGTCTAGTGATTCGCCCATATTGACGTTTTCTACATTAGCTTTCGAAACGAAATATGTCGATTTCAATATCTCTAACCCGCAAGTAAGGGCAGGGGTATATTGCTATAATCAAAACGCCGTAGTGATTGTTTCAGAAGTTTCGATGTATGACGTTACAGACACTGTTACAAACAGCGCAAATGCTTCAGCAATTTCAACATTAAACACTACGGTATCGAACCAGGGCGGGCAGATAACAGCAAACGCAAACGCACTGACTTCATTAACATCTACAGTTAACGGTCATACTGCATCAATACAAACAATAAGCTCAACAACGTCAGGATTGAACAATACAGTTAATGCACTGTATACTGTCAGAGTGAGCACTTCTGGCAGCAATTCTTACGTAGCGGGAATGCAGTTAGGCGCTAACAATGCTGGTTCTTTTGCAGCGTTTTTAACAGACCAATTTAGAATTTCTCAAAGTATTGGCGGAGCTGTTCAAACAGTATTCCAAATTGTTAACGGCCAAACACAAATGGCAAGCGCTTTAATCGGCGACGCTACGATAACGAGCGCGAAGATTGCGGATAATATTCAATCGTCAGGCTTCGGAGTTTCTGGTCAAGGAGGATGGAGAATTTCAAAATCAACTAATGCTTTTGAAGTAGATGACAATAATAACGTTATCAGGTTCAGGGCGGGAAAATTGTCATGA

Genome Context

Tertiary structure

PDB ID

3237eeead6926358dd14b32b8c7f2b11c0bd04387e43b9568b342a7275272f14

ColabFold

Source ColabFold

Method ColabFold

Resolution 0,7056

Oligomeric State monomer

Download PDB

Model Confidence

Very high
pLDDT > 90

High
90 > pLDDT > 70

Low
70 > pLDDT > 50

Very low
pLDDT < 50

Protein

Domains

Domains [InterPro]

Domains [InterPro]

Taxonomy

Coding sequence (CDS)

Coding sequence (CDS)

Genome Context

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)

Model Confidence