Protein

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Genbank accession
QDU35678.1 [GenBank]
Protein name
tail spike protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MSDCKNYVSEEDIKALKESELHIEHVARSRNLAGEKVLSVTDTIRGDKVTNRTLDGLEELYQNSLSNIGYQQMGDYKPGITIDGRNQIVFENGSWYIYRGDLPHVTTGTSLAEDGGIWSEENPNGQWVNVNYDNFSNQRIFKKIGQKIQLTDYPSILDFDGVYVDDESKDSSEGILEAIQKESTLYFPPGVYRVDKTIESKPGGLIIFDKNATLIRLKKYSSSTSPVFSLRGQYSESIGGRFITENNHPFGVVTCGHNSDQDSKNALCWRLIRPYIKGVKEIGNIGLNIPSGQINIGTSSANYFGYIDNPIVQNADELIVFNEIANGHCIISPQLYKGITSGISFYGAYGNHVVGGFLHTSDNGVIGINLKNRRFENTHHSNNNQIEGFSVEPGGDRSKALFIDTECIRNRINIMGNVAGGVTVLNNKNDYDTTYIKSSFNNNIRELKVFDKIVVQNKSQFFQSKKDVPENKKELFFRIEIPSNGGGHLLELILLAKSSSLDFTLPVILLIGVNNRTGVLNIEKIDEKSSSHKSGDISYSTNGNILEIYGTSRNNGTNTIYKNLSMSLTVTSNDESLLNVTG
Physico‐chemical
properties
protein length:582 AA
molecular weight: 64634,46480 Da
isoelectric point:5,73434
aromaticity:0,08763
hydropathy:-0,42663

Domains

Domains [InterPro]
DC_1596
STR
8–477
DC_1596
G3DSA:2.10.10.80
ATT
70–138
G3DSA:2.10.10.80 IPR011050
IPR012334
STR
160–289
IPR012334
QDU35678.1
1 582
Architecture
STR
ATT
STR
STR 8-69 | ATT 70-138 | STR 139-477 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QDU35678.1
1 582
Domain Start End Length (AA) Confidence
N-terminal 1 171 171 0,9917
Central domain 172 425 255 0,9886
C-terminal 426 582 156 0,9541
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-171
Central
172-425
C-terminal
426-582

Taxonomy

  Name Taxonomy ID Lineage
Phage Proteus phage vB_PmiP_RS10pmA
[NCBI] 		2250311 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Proteus mirabilis
[NCBI] 		584 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QDU35678.1 [NCBI]
Genbank nucleotide accession
MG575420.1 [NCBI]
CDS location
range 28901 -> 30649
strand -
CDS
ATGAGTGATTGCAAAAATTACGTATCAGAAGAAGATATTAAAGCGTTGAAAGAGAGTGAACTCCACATTGAACACGTTGCACGTTCTCGAAATTTAGCGGGTGAGAAAGTTTTATCTGTTACCGACACTATCAGAGGTGATAAAGTAACCAATAGAACTTTAGATGGGTTAGAAGAATTGTATCAAAATTCTCTGTCAAATATTGGATATCAGCAAATGGGAGATTATAAACCTGGTATTACTATTGATGGACGTAATCAGATCGTGTTTGAAAATGGTTCTTGGTACATTTATCGCGGTGATTTACCGCATGTTACTACGGGTACGTCGCTTGCTGAAGATGGTGGTATTTGGTCTGAAGAAAACCCTAACGGACAATGGGTGAATGTGAATTATGATAACTTTTCTAACCAGAGAATATTTAAGAAAATTGGTCAAAAAATTCAATTAACAGATTACCCATCGATACTCGACTTCGATGGTGTTTATGTAGATGATGAATCGAAAGACAGTTCTGAAGGTATACTGGAAGCAATTCAAAAAGAATCCACTCTGTATTTCCCACCAGGAGTATACAGAGTGGATAAAACAATTGAATCAAAACCAGGAGGGTTAATAATCTTTGATAAGAATGCAACACTGATAAGATTGAAAAAATATTCAAGTTCTACATCTCCAGTGTTTTCATTGAGAGGTCAATATTCAGAGTCGATAGGTGGTAGATTCATTACTGAAAATAACCACCCTTTCGGAGTAGTTACATGTGGTCATAACAGTGATCAAGATAGTAAAAACGCTTTATGTTGGAGATTGATCCGACCTTATATCAAAGGTGTAAAAGAAATAGGTAACATAGGGCTGAATATTCCAAGCGGACAAATAAATATTGGGACATCCTCGGCAAACTATTTTGGTTATATAGATAACCCAATTGTTCAGAATGCCGATGAACTTATAGTGTTTAATGAGATCGCTAATGGACACTGTATAATATCTCCACAATTATATAAAGGTATAACGAGTGGTATAAGCTTTTACGGTGCTTATGGTAATCATGTAGTAGGAGGATTTCTTCATACTTCAGACAATGGTGTGATCGGTATTAATTTGAAGAATAGACGATTTGAAAATACTCATCATTCAAACAATAATCAAATAGAAGGTTTTTCAGTAGAGCCGGGTGGTGATAGATCTAAGGCGTTATTTATAGATACGGAATGTATTCGTAATAGAATTAATATAATGGGTAATGTAGCAGGAGGAGTGACAGTTTTAAATAATAAAAATGATTATGACACCACTTATATTAAAAGTTCTTTTAATAATAATATTCGCGAATTAAAAGTATTTGATAAAATAGTTGTTCAAAATAAGTCTCAGTTTTTCCAGTCTAAAAAGGATGTTCCTGAAAATAAGAAGGAGTTATTCTTTAGAATAGAAATACCATCCAATGGTGGAGGACATTTATTGGAACTAATATTGCTGGCTAAAAGTTCTTCTCTTGACTTCACTCTTCCAGTAATACTATTAATTGGGGTAAACAATAGAACAGGAGTATTAAACATAGAGAAAATAGATGAAAAATCATCATCGCATAAAAGTGGTGATATTTCATACTCAACTAATGGTAATATCCTTGAAATTTACGGGACTTCTCGTAATAACGGAACCAATACTATTTATAAAAACTTAAGTATGTCACTGACTGTAACCAGTAATGATGAATCATTACTTAATGTTACTGGTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
eda5d6b8d059bd0ffa330c0929076f407b564b535acc3125cb86143b382cb3ed
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7463
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genomic and ecogenomic characterisation of Proteus mirabilis bacteriophage to support development of cocktails for phage therapy Alves,D.R., Nzakizwanayo,J., Dedi,C., Olympiou,C., Hanin,A., Kot,W., Hansen,L., Gahan,C., Schellenberge,P., Ogilvie,L.A. and Jones,B.V. 2019-08-06 — GenBank