Protein

View in Explore
Genbank accession
YP_010674815.1 [GenBank]
Protein name
tail fiber protein
RBP type
TSP
Evidence UniProt/TrEMBL
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MHFTQNPIGSDDQLDLQDNAISFDYAMNSPAALWQDRFGKQHKTVQQALKDVGFKPAGFDFVSGGTLGIGDRDKCVFYPTDGYWYSWNGKLPYVVPANSSPTPGGKKGWGVVTRDERVIAREALRRTYKEAGYDLVEGSFEQGAELVNVNDVLLQERTGKAFSGPAGVVAAGTNPTGGGFVDKSGALLRHELATSDGAAKVGTSGANGGSVQDFIDAQYTTVAELATGKFGVGQYVRLTDKALGLFHIQSGGTVNGLWYLDAGNGNTAVYEDGIINSSKSIGVDSGSTNNAAALTYGAKLSNFTLEKSETPYKSGQVVPANDFSLDGQLNTIELVSQTHPLFFDNTVSTSSKKFSLKNAKLDLNKDFVTKGNLSGGGVWLGNGNSAGGPLQWSTVEIENVDVIDGFRVGLNLLSCDRVSVDNYSFVNGGIAASGFFAGGGSTENCRKVNLNNIIVRDTYGFGWHLYRCDSVVATNTEFTGLTYNGLAIGFTLTESKNVQILNHVGSTDGDTLEINASQNVVVENFKVTSSAQRGLLIGDNGTGINNRNITLRNGEINGGGAFSAAINYCHGLLAERVKFNKPIAVIASDGSRSSDLTFVDCSINAPMSSTMALKRFVHRNTRFTDCVLDKNEYQFTMRDIGGVTLAAGDSVTIPIYTVVTNASVFFVDVIGVLSASGPSQMGWRRYKCVYQGVNDANLNNTLVTLQDSAAGYGVARHLTLEIVNGVMKVINNGAISLLANFIVNGVVSTSAVVRP
Physico‐chemical
properties
protein length:755 AA
molecular weight: 80321,77130 Da
isoelectric point:5,68045
aromaticity:0,09007
hydropathy:-0,12106

Domains

Domains [InterPro]
DC_1559
ATT
1–137
DC_1559 IPR012334
G3DSA:2.10.10.80
ATT
56–118
G3DSA:2.10.10.80 IPR011050
DC_0018
ATT
100–307
DC_0018 IPR011050
YP_010674815.1
1 755
Architecture
ATT
STR
ATT 1-307 | STR 432-664 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010674815.1
1 755
Domain Start End Length (AA) Confidence
N-terminal 1 290 290 0,9949
Central domain 291 631 342 0,9938
C-terminal 632 755 123 0,9924
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-290
Central
291-631
C-terminal
632-755

Taxonomy

  Name Taxonomy ID Lineage
Phage Aeromonas phage PS1
[NCBI] 		2591406 Uroviricota > Caudoviricetes > Chimalliviridae > Ferozepurvirus PS1 >
Host Aeromonas hydrophila subsp. hydrophila
[NCBI] 		196023 Pseudomonadota > Gammaproteobacteria > Aeromonadales > Aeromonadaceae > Aeromonas > Aeromonas hydrophila subsp. hydrophila

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010674815.1 [NCBI]
Genbank nucleotide accession
NC_070998 [NCBI]
CDS location
range 150273 -> 152540
strand -
CDS
ATGCACTTTACGCAAAACCCCATAGGAAGCGATGATCAACTTGATCTTCAAGATAATGCTATCTCGTTTGACTATGCAATGAATTCACCTGCTGCTTTGTGGCAGGATCGTTTTGGTAAGCAACACAAGACTGTACAACAAGCTTTAAAAGATGTGGGTTTTAAACCAGCAGGGTTTGACTTTGTTAGTGGTGGAACTTTAGGTATCGGCGATCGGGATAAATGTGTCTTTTACCCAACGGATGGATACTGGTACAGTTGGAACGGTAAATTACCTTATGTAGTACCAGCTAATAGTTCCCCTACCCCAGGTGGTAAGAAAGGATGGGGTGTTGTAACCAGGGATGAACGCGTAATAGCAAGAGAAGCACTTCGTAGAACTTATAAAGAAGCAGGATATGATCTTGTTGAAGGTAGTTTTGAACAAGGTGCCGAGCTGGTAAACGTTAACGATGTGTTACTACAAGAGCGTACTGGAAAGGCGTTCTCCGGGCCTGCTGGTGTAGTTGCCGCTGGTACGAATCCGACTGGCGGCGGGTTTGTTGACAAGAGTGGAGCGCTGTTAAGGCACGAACTAGCAACCTCGGACGGCGCAGCGAAAGTAGGCACATCCGGTGCAAATGGTGGAAGCGTTCAGGATTTTATTGATGCTCAATACACTACGGTTGCAGAGTTAGCAACAGGTAAATTTGGTGTTGGTCAGTATGTGAGACTAACTGATAAGGCACTGGGATTATTTCATATACAATCTGGCGGCACTGTTAATGGGTTATGGTACTTAGACGCTGGTAATGGAAATACCGCAGTTTATGAAGATGGTATAATCAACTCATCAAAATCAATCGGTGTTGACTCAGGGAGCACAAACAATGCAGCTGCGTTAACATATGGGGCTAAGCTGTCAAATTTCACATTAGAAAAATCGGAGACACCTTACAAATCTGGACAGGTAGTTCCAGCTAATGATTTCTCACTAGATGGGCAGTTGAACACCATTGAGCTAGTCTCGCAGACTCACCCGCTATTTTTTGATAATACTGTCTCTACATCGAGTAAAAAATTCTCTTTAAAAAACGCAAAACTAGATTTGAATAAGGATTTTGTTACAAAAGGTAATCTATCTGGAGGTGGCGTGTGGTTAGGGAATGGCAACTCTGCTGGCGGCCCATTGCAGTGGTCTACTGTTGAAATTGAAAACGTGGATGTGATAGATGGGTTTAGAGTCGGCTTAAATCTTTTATCGTGTGACAGAGTAAGTGTAGACAATTACTCTTTCGTTAATGGTGGGATAGCCGCATCTGGTTTTTTTGCGGGCGGCGGTTCCACTGAAAATTGCAGAAAGGTTAACCTAAATAACATTATAGTTAGGGACACCTACGGTTTCGGGTGGCATTTATACAGATGTGATTCTGTAGTAGCTACGAATACCGAATTTACTGGACTGACTTACAACGGGTTAGCAATCGGGTTTACTCTAACCGAAAGTAAAAACGTTCAGATTTTAAATCACGTTGGCTCTACCGATGGTGACACGTTAGAAATAAACGCTAGTCAAAACGTGGTAGTTGAAAATTTCAAAGTAACATCATCGGCGCAACGCGGGCTACTTATTGGTGACAATGGCACTGGGATCAATAACCGAAACATCACACTCAGAAATGGTGAAATTAACGGAGGGGGTGCGTTTTCAGCAGCGATAAATTACTGTCATGGGCTTCTAGCGGAGCGTGTGAAGTTCAACAAACCAATCGCTGTGATCGCATCCGATGGAAGCCGTTCTTCGGACTTAACTTTCGTAGATTGCTCGATCAATGCACCTATGTCCTCAACGATGGCGCTAAAAAGATTCGTACACAGAAACACAAGATTCACTGATTGCGTTTTAGACAAAAATGAATACCAATTCACTATGAGAGACATTGGTGGAGTTACACTAGCAGCTGGGGATAGTGTAACTATACCGATCTATACAGTTGTCACGAATGCCAGCGTATTTTTTGTTGACGTGATAGGCGTGCTTTCCGCCTCAGGCCCGTCCCAAATGGGCTGGCGTAGGTACAAGTGCGTTTACCAAGGTGTTAACGACGCAAACCTGAATAACACGTTAGTGACTCTACAAGATAGCGCAGCAGGATATGGGGTAGCAAGGCACTTGACGCTAGAAATAGTCAACGGAGTTATGAAAGTGATTAACAACGGAGCCATTAGTTTACTAGCTAACTTTATTGTAAATGGTGTGGTTTCTACTAGCGCAGTCGTTAGACCTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
7b2109348fccb7c4955cfe9a03e17b25739d1ed375498272b5e96740ca411921
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7838
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence of Aeromonas hydrophila bacteriophage PS1 Rai,S., Tyagi,A., Kumar,N. and Singh,N. 2020-04-30 — GenBank