Protein

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Genbank accession
YP_009784184.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MGFDTTLPTPIFGVSTIPPVARPDGYCTKQVNWRNDPQEKLTVRPSFKSGLQGYSDRPAWPGPVYSSKDFVTYRDGQRLEVAVGADHIDNKLYVMQRKGFAPFQEIKTVTTDPKWFNGMEADLGINDVDDLLFIWNKNKVMKSVVVNNQNPLKYTQAALFNVISALNYGESVSVQVKRNDVALMTATWTVPGLTGTNTADADAKRATTRVATELTNLINAYSGTYRLIAQNFGSNVYVRPNSSVGTAWGNNDTLTLMVASGRGDDSIVVKNYQTGNISGLPKYCVPDVIRKIQPDPTSQSGVYYLRSAPLDGTTASIMTEVIWVEAYNPAEETSFEAGSNFYTLNIDTNTLEAFNLERRAIGDNISNPPRDFIGKKVEHIDMFQDRLLILAGNKMNLSKTRDFKQFWRNSATNLLLTDPTDVGTSGNNSTLKHAVYHNKDLLVFAGDKQFKISGQQPITPQTAALPITTANECNLDVSPVLMGSYVYYAVNHGSSGGVRRFEIQVDTNMDTSVPISDHIIGMIPGRITLLVANPNQTMLIVRSNACKPNEFFVFEEQRWGDSRIMSWCTWRLRDGVTINNIDIANETITVRYNTWKYMHCSLKGGRTWPETEVRMDELSVLLRGTDGMVEVPKLYNIEHPDFRLVLGTKYSGNTPLRNTLTQLDWTLAGERNGNWLLDVGGTENANVYAGYKYEAVYEPTRPYERDREGNVRTTDRLRVAHYFLELSNTYEIRRRIISEHWDIPDDEFTSRNAATQQYIDEVKPFTGQWRTSVDMNADDCTVEFINDSPYAATIASISYRAQQYSTKRRR
Physico‐chemical
properties
protein length:810 AA
molecular weight: 91228,48270 Da
isoelectric point:6,04201
aromaticity:0,09877
hydropathy:-0,44741

Domains

Domains [InterPro]
DC_0058
STR
1–810
DC_0058
IPR058003
TTP
5–809
IPR058003
YP_009784184.1
1 810
Architecture
STR
STR 1-810
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009784184.1
1 810
Domain Start End Length (AA) Confidence
N-terminal 1 624 624 0,7045
Central domain 625 799 176 0,2263
C-terminal 800 810 10 0,9694
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-624
Central
625-799
C-terminal
800-810

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage JSF7
[NCBI] 		1292086 Uroviricota > Caudoviricetes > Autographivirales > Tawavirus JSF7 >
Host Vibrio cholerae
[NCBI] 		666 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009784184.1 [NCBI]
Genbank nucleotide accession
NC_047741.1 [NCBI]
CDS location
range 32446 -> 34878
strand -
CDS
ATGGGATTCGATACTACCTTGCCCACGCCTATATTTGGCGTGAGCACTATACCGCCAGTTGCAAGACCTGATGGATACTGTACCAAACAAGTCAACTGGCGGAATGACCCACAAGAAAAGCTAACAGTAAGACCTAGCTTTAAGTCTGGGTTACAAGGCTATAGTGACAGACCAGCATGGCCTGGCCCAGTGTACAGCAGCAAAGACTTTGTTACATACAGAGACGGGCAGCGCCTAGAAGTAGCAGTAGGTGCTGACCACATAGACAACAAGCTGTACGTGATGCAAAGGAAAGGCTTTGCGCCTTTCCAAGAAATAAAGACAGTAACGACAGACCCTAAGTGGTTCAACGGTATGGAAGCTGACTTGGGCATCAATGACGTAGATGACCTGTTGTTCATTTGGAACAAGAACAAGGTGATGAAGTCAGTTGTAGTCAATAACCAAAACCCGCTGAAGTACACACAAGCTGCTCTATTCAACGTAATATCTGCACTAAACTACGGGGAATCGGTGTCAGTGCAAGTTAAGCGTAATGATGTGGCGCTTATGACAGCTACATGGACTGTGCCGGGTCTGACAGGTACTAACACAGCAGATGCTGACGCTAAGCGTGCGACAACAAGAGTGGCAACAGAGTTAACAAACTTGATTAACGCATACTCTGGGACTTATAGACTAATCGCACAGAACTTTGGCTCAAACGTGTATGTTAGACCAAATAGTAGCGTGGGTACAGCATGGGGCAACAATGACACACTAACACTAATGGTGGCCTCAGGAAGAGGCGACGACTCCATAGTAGTAAAGAACTACCAGACAGGTAACATATCTGGCTTGCCAAAATACTGTGTTCCAGATGTAATACGCAAGATACAGCCTGACCCAACAAGTCAGAGTGGCGTGTACTACTTGCGCAGTGCACCACTGGACGGAACAACAGCTAGTATAATGACAGAAGTGATATGGGTTGAGGCGTACAATCCAGCAGAAGAAACATCATTTGAAGCTGGTAGTAACTTCTACACACTTAACATAGATACTAACACGCTAGAAGCTTTCAACTTGGAACGCAGAGCTATAGGGGATAACATAAGCAATCCGCCTAGAGATTTCATAGGTAAAAAGGTGGAACATATCGACATGTTCCAAGACCGCCTGCTAATACTAGCAGGGAACAAGATGAATCTCAGCAAGACCAGAGACTTTAAGCAGTTCTGGCGTAACAGTGCTACAAACCTGTTGCTCACTGACCCTACTGACGTTGGTACGTCTGGTAACAACAGTACACTAAAACATGCTGTGTATCACAACAAAGACTTGCTAGTCTTCGCTGGAGACAAACAGTTCAAGATTAGCGGCCAACAGCCTATAACGCCACAGACAGCGGCGCTACCTATAACAACAGCTAACGAGTGCAACCTAGACGTGTCTCCAGTGTTGATGGGTAGCTACGTGTACTACGCAGTCAACCACGGCTCTAGTGGTGGTGTGAGACGCTTTGAGATTCAGGTGGACACTAACATGGACACCTCTGTGCCAATAAGCGACCACATCATTGGTATGATACCGGGGCGTATTACGCTGTTAGTCGCTAACCCGAACCAAACGATGCTCATAGTGCGCTCAAACGCCTGTAAGCCTAACGAGTTCTTTGTGTTTGAAGAGCAACGTTGGGGAGACTCGCGTATTATGTCTTGGTGTACATGGCGCTTGAGAGATGGTGTTACCATCAACAACATCGACATCGCCAACGAGACAATCACTGTACGCTATAACACGTGGAAGTACATGCACTGTTCATTGAAAGGTGGGCGCACATGGCCTGAGACGGAAGTGCGCATGGACGAATTGTCAGTGCTACTGCGTGGTACAGATGGAATGGTGGAAGTACCTAAGCTGTATAACATAGAGCACCCAGACTTTCGTCTGGTGCTCGGCACAAAGTACAGTGGTAACACTCCGCTACGTAACACGTTGACACAGTTGGACTGGACACTAGCAGGTGAGCGCAATGGTAATTGGTTGCTAGATGTGGGTGGTACTGAGAATGCTAACGTGTACGCTGGGTACAAGTACGAAGCTGTATACGAGCCTACTCGCCCGTACGAACGAGACAGAGAAGGTAACGTACGCACAACAGATAGACTGCGTGTAGCACATTACTTCTTGGAACTAAGCAACACGTACGAGATTCGCCGTCGCATTATCTCAGAGCACTGGGATATACCTGATGACGAGTTCACTAGCCGCAACGCAGCCACACAGCAATACATTGACGAAGTGAAGCCATTCACTGGTCAATGGCGCACCAGTGTGGACATGAACGCTGACGACTGTACTGTGGAGTTTATCAATGACTCTCCTTATGCAGCAACGATAGCTAGTATTAGTTATCGTGCTCAGCAATACTCAACTAAACGGAGACGCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
f552ecd3fa2dd79991b5fb5c1237d538ccf8744775db5d330513b149fef16fdd
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8718
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50