Protein

View in Explore
Genbank accession
WNL51041.1 [GenBank]
Protein name
baseplate wedge protein, intermediate
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MTLRKIVNPSDQTQAFLPQFVGENYQTFVNFMARSAESAERQGFGQDLLQNLQRYRDFRTYSKGIVESGVLSKRLDIDEEDELLLENGVGFPLTNGVVLVGDEVILYRTRNGNTLSDLHRAASATVVLPSLTSLGEYKHGPAQEYRAGTEVKNISSLFLTAMLSNIHQTFTPNIYSEKVDAQVDRSILLHNIKDFYGAKGSKLSVIALFKFIYGDADVDVFYPGDQMIRPSSASWQQFLIGNAIPFPIGLLGETGIAFDNKTVLGAQLEFRRYGEEDAYGKAVVEFATQAVLPEGVGFTLYLDASSFKGRVNLNKSETPSTVLKRNLLYYGSVSTIAADVTTVTVDSTNDFPESGVIFVGDEAIRYTSKSNNQFFGCSRAIDGHGGTHAIGKVVYGAEYAKLTLADGQSTNIWLGALYRGAEITDSGILYKLDDDVDVSLPGDSDYRDPILVSLQENTNDTLVSMTTTSNITDVTDVSVGISAIYYDDENVIVESSGLPGYDIGPFSTDGSVGPALRDNGSSTHVIPRKYRNNQIDRTGYEWQKVQTGTGRIGMYVDGTPIVSIRNGDKVVSGQITKFNVVNGGSDYRFPTVVLEPEGATAEVELYSGVITGVTVSQNANYTEIPTVRITEGEGAKFALTFDQWGRLTNVVILSGGAFYFDPPALVLVDQTGAGAGAALACTVTRDGRIDSVTITNPGLDYRPSTTELQTVTLGRDAVITAEVETYNFNRVEAIAQSATELKDSGNGILAALNVGDEKDTFAMAVRHTNLLAQLDTDESKHSSIIGWAYDGNPIYGPKGFINGVDDSAGVGLVAAGYSLQGDRTTVIPEGSTAPGTLPPDVATYPMGTFVEDYLYDPENASVVGAVQTELDQDILDDPDGRRLRYQFDFGAAILDEHNGRICNTPEFPADKYPDGVYCYFITEFGQFSQFPYVIGPTFRDFPTSQRTIVYDRGDEIINSTERQANFSDEIVYLKQKNMKRLRSLSIPDVASKPLFEITEIKSGGIDSVVCVQGSPDNATIRDTFYFANTGTGGEGAAAIVEELKGRDIISAGTRKIATRLMSHTQRINLIDEVNINSLVFIEGSEFKTNGGSTATVLNWNHKTGYLDVHVTSERLIRFGDKFRDNADNEITIPASKFPENKLFSAETAGSRSTYASWEVPDRTSATGGDLWWSAKTGRLYVYFDDGTNGNWVTTQPSGSRSFYADIEDTGTLESSSTTQNFATPQEDTAVTISTMAPTERADGTPNGSGDLWWSTHTGMLYIWVVETSTDDDDGTLKTNSQWVSTDPTAALSNHLDQSLETSILGTTPADITAFTQRVEVLMSDSAPLTMSDGGPLLPGTLWWSSASGKMYIYYTDADSSQWVVTNPTTVQSGPEALDVLVTGDGSEIDYLTLLPVPVDMTDLWFEPNMYSDDFEPGNIVEIRQGVPGNEDLRERVVIVSKMSEKGRYAVSRAPDVYTDSMLFAEPAPNKMELAHGAEVVNLSRLHFRVTCTVDHDLKVGEVIKVSGTGPGFDGKQKVYRIGKTKKASFTAVLTGDTVTSITIDDPGENYPERFYLNIYGGGGLGATAVAFIDEDGKVESTFVLTGGSGYTSAPSVTHYPKLTTNEFLILVGRDYGDTPNFSYTTTAEYIFGTPSKIRMLSRGQGYLELPEVVGLVRSEDIRAEAEPILDGTQIAGFNVTKVGFGYIDPIVVIDDLTSAGSGASATVRLDENGAVKNISVTNPGSGYVEPVVTLVEGNGTYLATTKDIGRITGFQLLEPSSIVNADSVSYPELQPPLRIVSSVVFAPAEEIWQGDSQGNNKLFSATVESFNEATHVATLINYDGEIDITESIYGESGQVGTVFAYDEADFKLSTSSFVKPAGRFIDSTGMISDQNSVIQDSLYYQTFSYVISSSKQKEEFENVVDATTHPAGCVMFAETRLEFRLQMGLSSETAIIG
Physico‐chemical
properties
protein length:1937 AA
molecular weight: 210310,17140 Da
isoelectric point:4,50457
aromaticity:0,09448
hydropathy:-0,21972

Domains

Domains [InterPro]
DC_0756
RBD
24–274
DC_0756 DC_0146 DC_0695
DC_1555
ATT
272–631
DC_1555 IPR025924 DC_0835 DC_0832
WNL51041.1
1 1937
Architecture
RBD
ATT
STR
ATT
RBD 24-271 | ATT 272-631 | STR 632-1244 | ATT 1343-1935 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WNL51041.1
1 1937
Domain Start End Length (AA) Confidence
N-terminal 1 1790 1790 0,9276
Central domain 1791 1926 137 0,2115
C-terminal 1927 1937 10 0,0471
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-1790
Central
1791-1926
C-terminal
1927-1937

Taxonomy

  Name Taxonomy ID Lineage
Phage Synechococcus phage S-CREM2
[NCBI] 		3075959 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Synechococcus sp.
[NCBI] 		1131 cellular organisms > Bacteria > Bacillati > Cyanobacteriota/Melainabacteria group > Cyanobacteriota > Cyanophyceae

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WNL51041.1 [NCBI]
Genbank nucleotide accession
OR473000 [NCBI]
CDS location
range 77594 -> 83407
strand +
CDS
ATGACCCTGCGTAAGATCGTAAATCCTTCAGACCAAACACAAGCGTTCCTCCCACAGTTTGTTGGTGAGAACTATCAGACCTTTGTCAACTTTATGGCGAGGTCCGCTGAGTCTGCGGAGAGACAGGGTTTCGGTCAAGACCTACTGCAGAACCTTCAACGCTACAGAGACTTCCGTACCTACTCCAAGGGTATTGTTGAAAGTGGAGTATTGTCTAAAAGACTCGACATTGACGAAGAAGACGAACTGTTACTGGAGAACGGAGTTGGTTTCCCACTGACCAACGGTGTCGTTCTAGTTGGGGACGAAGTTATCTTATATCGAACCCGTAACGGTAACACCCTCTCAGACCTCCATAGGGCCGCCTCTGCGACCGTTGTTCTTCCCTCCCTAACTTCCTTAGGTGAATACAAGCACGGCCCAGCACAGGAGTATAGAGCGGGCACCGAAGTAAAGAACATCTCTTCTTTGTTCTTGACAGCGATGCTGTCGAACATTCACCAGACGTTCACTCCTAACATTTACTCAGAAAAGGTTGACGCTCAGGTTGACCGTTCTATTCTGTTACACAATATTAAGGACTTCTATGGCGCTAAGGGTTCCAAACTTAGTGTCATTGCTCTGTTTAAGTTCATCTATGGTGACGCAGACGTAGACGTGTTCTACCCTGGCGACCAAATGATTCGCCCCTCCTCTGCTAGTTGGCAGCAGTTTCTTATTGGTAACGCAATTCCTTTTCCTATTGGTCTCCTTGGTGAGACTGGAATTGCTTTTGACAATAAGACTGTTCTGGGTGCCCAGTTGGAGTTCAGAAGATATGGTGAAGAAGATGCATACGGTAAGGCAGTTGTTGAGTTTGCCACTCAGGCTGTATTGCCAGAAGGTGTAGGTTTCACACTTTATCTCGACGCTTCCAGTTTCAAAGGTAGAGTCAACCTCAACAAGTCAGAAACGCCGTCAACCGTACTGAAGAGAAACCTCCTCTACTATGGTTCAGTATCTACTATTGCTGCTGACGTAACCACAGTTACCGTAGATAGCACCAACGACTTCCCTGAGAGTGGAGTCATCTTTGTTGGAGACGAAGCAATTCGTTACACCTCTAAGTCAAATAACCAGTTCTTTGGTTGTAGTCGTGCAATCGACGGACACGGCGGCACTCACGCTATCGGTAAGGTAGTGTACGGTGCAGAATATGCAAAACTAACTCTGGCAGACGGGCAGTCAACTAACATATGGTTGGGTGCTCTATATCGAGGAGCAGAGATTACCGACTCTGGAATTCTTTACAAGTTAGACGACGACGTTGATGTTAGTCTTCCTGGTGATAGTGACTACAGAGATCCTATCTTGGTTTCTCTTCAGGAGAACACCAACGACACTTTGGTCAGCATGACCACCACTTCTAACATTACCGACGTCACCGATGTTAGTGTTGGTATCTCTGCGATCTATTACGACGACGAGAACGTAATCGTAGAGAGTAGTGGACTTCCTGGATATGATATTGGACCATTCAGTACCGACGGTAGTGTTGGTCCTGCCCTCAGAGATAACGGAAGTTCCACTCACGTTATTCCCCGTAAGTATAGAAACAATCAGATTGATAGAACTGGTTATGAGTGGCAGAAGGTTCAAACTGGTACTGGCCGTATCGGCATGTACGTCGATGGTACCCCTATCGTCTCTATTCGAAACGGTGACAAAGTAGTTAGTGGTCAAATTACAAAATTCAATGTTGTCAATGGTGGTTCTGATTATAGATTCCCAACTGTTGTATTAGAACCAGAAGGTGCAACTGCAGAAGTCGAATTATACTCTGGTGTTATCACAGGAGTCACAGTATCACAGAACGCAAACTATACAGAGATTCCTACCGTTCGCATTACCGAAGGTGAAGGTGCAAAGTTTGCTCTTACCTTTGACCAGTGGGGTCGCCTTACCAATGTTGTTATTCTTTCCGGTGGTGCGTTTTACTTTGATCCCCCTGCTCTTGTTTTGGTTGATCAAACTGGTGCAGGTGCAGGTGCTGCCCTTGCTTGTACTGTAACCAGAGACGGCAGAATCGACTCAGTCACAATTACCAACCCCGGTCTCGATTATAGACCTTCCACTACAGAACTCCAGACAGTAACTCTGGGTAGAGACGCTGTTATTACTGCAGAGGTCGAGACTTATAACTTCAACAGGGTTGAGGCAATTGCCCAGTCTGCAACAGAACTGAAAGATAGCGGAAATGGTATCCTAGCTGCTCTCAATGTGGGAGACGAGAAGGACACGTTTGCCATGGCAGTTAGGCATACTAATCTTTTGGCACAGTTGGATACTGACGAGTCCAAGCACTCTTCTATCATTGGTTGGGCGTATGACGGTAATCCAATTTACGGTCCTAAAGGTTTCATCAACGGCGTAGATGATTCTGCCGGTGTTGGTTTGGTTGCTGCTGGTTATTCCCTGCAAGGAGATAGAACTACGGTTATCCCAGAGGGTTCAACTGCCCCCGGAACTCTACCACCAGACGTGGCAACTTACCCAATGGGTACCTTTGTTGAGGATTACCTTTATGACCCAGAGAACGCAAGTGTTGTTGGTGCAGTTCAGACAGAATTGGACCAGGATATCCTGGACGACCCAGATGGCAGAAGACTTCGTTATCAGTTTGATTTCGGTGCTGCTATCCTTGACGAGCACAACGGTCGTATCTGTAACACCCCAGAGTTCCCTGCTGACAAATATCCAGACGGAGTGTATTGCTACTTCATTACTGAGTTTGGTCAGTTCTCACAGTTCCCTTATGTAATTGGTCCCACCTTTAGAGATTTCCCAACAAGTCAAAGGACTATTGTGTATGACCGTGGTGATGAGATCATCAACTCAACTGAAAGACAAGCAAACTTCAGCGATGAGATTGTCTACTTGAAGCAGAAGAATATGAAGAGACTCAGAAGTCTCTCCATTCCCGACGTTGCGTCTAAACCTCTGTTTGAGATTACCGAAATCAAATCTGGTGGTATCGACTCCGTGGTTTGTGTTCAGGGGTCACCAGACAACGCAACAATAAGGGATACTTTCTACTTTGCCAACACTGGCACAGGTGGAGAGGGTGCTGCTGCTATCGTTGAGGAGTTGAAAGGTAGAGATATTATTTCTGCTGGAACTCGCAAGATTGCCACCAGACTTATGTCTCACACCCAACGCATTAACCTCATTGATGAAGTGAACATAAACAGTTTAGTCTTTATTGAGGGGAGTGAGTTTAAAACTAACGGTGGTTCAACTGCCACTGTCCTCAATTGGAATCACAAAACTGGTTACTTGGATGTTCACGTAACCTCAGAAAGGTTGATTCGCTTTGGTGATAAGTTCAGGGACAACGCAGACAACGAAATTACAATTCCTGCTAGTAAATTCCCAGAAAACAAACTGTTCTCTGCAGAAACTGCTGGAAGTCGCAGCACATATGCGTCTTGGGAAGTTCCCGACCGCACAAGCGCAACAGGTGGTGACCTTTGGTGGTCTGCCAAGACTGGTCGTTTGTATGTTTACTTCGACGACGGAACCAACGGCAACTGGGTAACAACACAACCTTCCGGTTCTCGCTCTTTCTACGCAGACATTGAAGACACTGGAACACTGGAGTCTTCCAGCACCACCCAGAACTTCGCAACACCACAGGAAGATACTGCGGTTACCATATCTACTATGGCACCCACAGAGCGTGCTGACGGCACCCCTAACGGGTCTGGAGACCTCTGGTGGTCTACTCATACCGGTATGTTATACATCTGGGTTGTAGAGACCTCTACAGACGACGATGACGGCACCCTGAAGACCAACTCACAGTGGGTTTCTACAGATCCAACCGCTGCACTTTCCAACCACCTCGACCAAAGTTTAGAGACCAGCATTCTTGGAACCACTCCCGCAGACATAACTGCGTTCACTCAAAGGGTTGAGGTTCTCATGAGTGACTCTGCACCTCTTACTATGTCTGATGGTGGACCACTCCTTCCTGGTACTTTGTGGTGGTCTTCTGCTTCAGGTAAGATGTATATCTATTATACGGACGCAGATAGTTCACAGTGGGTTGTCACCAACCCAACCACAGTACAAAGTGGACCCGAAGCACTTGACGTTCTTGTTACGGGCGACGGAAGCGAAATTGACTATTTGACTTTGCTTCCTGTCCCTGTCGATATGACCGACTTGTGGTTCGAACCAAACATGTACTCGGACGACTTTGAGCCAGGAAACATTGTAGAGATCCGCCAAGGTGTTCCCGGTAACGAAGACCTCAGAGAAAGAGTCGTTATCGTCAGCAAAATGAGCGAGAAGGGAAGATACGCCGTCAGTAGGGCCCCAGATGTCTACACCGATAGTATGCTATTTGCCGAACCAGCACCAAACAAAATGGAGTTGGCGCACGGTGCGGAAGTTGTCAACCTCTCCAGACTGCACTTCAGAGTAACTTGTACCGTCGATCACGATCTGAAAGTCGGTGAAGTTATTAAAGTAAGCGGTACTGGACCTGGTTTCGACGGTAAGCAGAAGGTTTATCGTATTGGTAAAACAAAGAAAGCATCTTTTACTGCCGTTCTCACTGGAGACACAGTTACTAGTATCACTATTGACGACCCCGGTGAAAACTATCCCGAAAGATTCTACCTAAACATTTATGGTGGTGGTGGACTTGGTGCGACTGCTGTGGCGTTTATTGACGAAGACGGTAAGGTTGAGTCAACTTTCGTTCTGACTGGTGGTAGTGGTTACACCTCTGCTCCTAGTGTCACCCACTATCCCAAACTAACAACTAACGAGTTCCTCATCCTGGTAGGTAGGGATTATGGTGACACACCAAACTTCTCATATACTACAACTGCCGAGTATATCTTCGGAACACCTTCCAAGATTCGTATGCTCTCTAGGGGTCAAGGATACTTGGAACTCCCAGAGGTTGTTGGTCTTGTTCGCTCTGAAGATATTAGGGCAGAGGCAGAACCAATCCTTGACGGTACTCAAATTGCAGGTTTCAACGTCACAAAGGTAGGTTTTGGTTATATCGACCCTATTGTTGTAATCGATGACCTTACTTCTGCTGGTTCTGGTGCGTCCGCAACTGTCCGTCTCGACGAGAACGGTGCAGTAAAGAACATCTCAGTAACCAATCCAGGATCAGGTTACGTTGAACCCGTTGTAACTTTAGTAGAGGGCAACGGAACATACCTCGCAACAACTAAGGACATCGGTCGCATCACCGGATTCCAACTATTGGAACCCAGTTCTATTGTCAACGCAGACTCGGTTAGTTACCCAGAACTACAACCACCTTTGAGGATTGTTTCTTCGGTGGTCTTTGCCCCCGCTGAGGAGATATGGCAGGGCGATTCCCAAGGTAACAATAAGTTGTTCAGTGCAACAGTTGAGTCTTTCAACGAAGCAACCCACGTAGCAACCCTTATCAACTACGACGGGGAAATTGATATAACAGAGTCGATTTATGGTGAAAGTGGTCAGGTTGGAACTGTTTTTGCTTATGACGAAGCAGACTTCAAGTTATCTACTTCTTCATTCGTCAAACCCGCTGGTAGGTTTATCGATAGCACCGGAATGATTAGTGATCAAAACTCGGTTATTCAAGATTCTCTGTACTATCAAACCTTCTCCTATGTTATTTCTTCTTCTAAGCAAAAAGAGGAGTTTGAGAACGTAGTTGACGCAACCACACACCCAGCAGGTTGTGTTATGTTCGCTGAGACTAGACTTGAATTCAGACTACAAATGGGTCTATCAAGCGAAACAGCGATAATCGGATAG

Genome Context

Genome Context

Tertiary structure

PDB ID
523c72946919700958f405cbe6b2cd8fbd8384cb494813c8d76b743134a026c6
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,6907
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation of a new cyanomyovirus promps the establishment of a new T4-like cyanophage cluster that is prevalent in the estuarine environment Liu,Y., Zheng,H., Meng,X. and Xu,Y. 2023-11-09 — GenBank