Protein

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Genbank accession
YP_010246629.1 [GenBank]
Protein name
exonuclease
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MGVLAALLSQPTAPEPAPARETITVDQSGNYSKSFYTDPHDDFYMPANRKELHNVLDVPDGYAITGDVTYRNRELVNGGSVTAFTYKFREVPKPLDIDDLAERVAKAPPANPIHGAGPHWFVFQAGDLQLGKIARDGSTEQIVETYMQSVRAAVVEYESLSDEFGVSGVQLSFPGDCMEGVVSQGGRNIWLTQETITEQTRIFRRLLLWTVDQFAPIANHVYVDVVNGNHDEANRQVNTKPGDGWATECAIALSDAMELNPEAYGHVEVRVPDSWCGHMTVPVGDSLVTVAHGHQWRRGKGMGWWAEQALNLQSPTTSGVLQHGHIHTYEIETTRDRTRISSPTFDTGSDWFREIHGGDSKLGGLVYLLRSNEISRVSLV
Physico‐chemical
properties
protein length:380 AA
molecular weight: 42017,34950 Da
isoelectric point:5,15248
aromaticity:0,08684
hydropathy:-0,37237

Domains

Domains [InterPro]
DC_1722
ATT
1–173
DC_1722 IPR029052
YP_010246629.1
1 380
Architecture
ATT
STR
ATT 1-173 | STR 174-345 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010246629.1
1 380
Domain Start End Length (AA) Confidence
N-terminal 1 136 136 0,1414
Central domain 137 335 200 0,0055
C-terminal 336 380 44 0,9964
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-136
Central
137-335
C-terminal
336-380

Taxonomy

  Name Taxonomy ID Lineage
Phage Gordonia phage Kudefre
[NCBI] 		2885975 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010246629.1 [NCBI]
Genbank nucleotide accession
NC_060136 [NCBI]
CDS location
range 63427 -> 64569
strand +
CDS
ATGGGCGTATTGGCAGCGCTGCTTAGTCAACCGACTGCACCTGAGCCGGCCCCGGCTCGGGAAACAATCACGGTCGACCAATCGGGCAACTACTCGAAGTCATTTTATACGGACCCGCATGATGACTTTTACATGCCCGCTAATCGTAAGGAGCTGCACAATGTTCTCGACGTACCTGACGGCTATGCGATTACGGGTGACGTCACTTATCGCAATCGTGAGCTTGTCAACGGCGGCAGTGTTACCGCTTTCACCTACAAGTTCCGAGAAGTACCCAAGCCCCTCGACATTGACGACCTGGCCGAGCGGGTAGCTAAGGCTCCCCCTGCTAACCCCATCCACGGGGCCGGCCCACACTGGTTCGTCTTCCAGGCCGGCGACTTGCAGCTAGGCAAGATCGCCCGCGACGGCTCTACCGAGCAGATCGTGGAAACCTACATGCAGTCCGTTCGGGCTGCTGTGGTCGAGTACGAAAGCCTGTCCGACGAGTTCGGCGTTTCCGGCGTCCAGTTGTCCTTCCCTGGCGATTGCATGGAAGGTGTGGTGTCTCAGGGTGGCCGCAACATTTGGCTCACTCAGGAGACGATTACGGAGCAAACGCGGATCTTCCGGCGTCTGCTGCTGTGGACGGTCGACCAGTTCGCTCCGATCGCTAACCACGTGTACGTCGATGTGGTCAACGGCAACCACGATGAGGCTAACCGTCAGGTGAACACGAAGCCTGGCGATGGTTGGGCTACCGAGTGCGCTATCGCCTTGTCGGATGCGATGGAACTTAACCCGGAGGCTTACGGGCACGTTGAGGTTCGGGTGCCTGATTCGTGGTGCGGTCACATGACTGTGCCGGTTGGGGATTCTCTGGTCACGGTGGCTCACGGTCACCAGTGGCGGCGCGGTAAAGGCATGGGGTGGTGGGCTGAGCAAGCCCTTAACTTGCAGTCCCCGACTACTTCGGGTGTTTTGCAGCACGGACATATTCACACCTACGAAATCGAGACTACGCGGGACCGCACTCGTATTTCGTCGCCCACATTCGATACCGGCTCCGATTGGTTTAGGGAGATTCACGGTGGCGATTCTAAGCTGGGCGGTTTGGTGTACCTGTTGCGGTCCAATGAGATATCGAGAGTGAGTTTGGTATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
0f154cd9b526219860997a714adc1224014943989e42f3b778e23694de867d75
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8383
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50