Protein

View in Explore
Genbank accession
YP_009818248.1 [GenBank]
Protein name
virion structural protein
RBP type
TSP
Evidence DepoScope
Probability 0,99
Protein sequence
MATLAKQTVETGNRIYIMIKNEVIGRAQSLTGDRSFGTQGVYELGSIMPHEHVFLKYTGTVSVERYRLRTGNMSDKKIAALGEDVLKIDILDINVKDNQTGALIICYRGCSINTYSETYRANDITGESAQFYYLTSSNLQNGGYSTSQFNTASGIS
Physico‐chemical
properties
protein length:156 AA
molecular weight: 17217,15130 Da
isoelectric point:6,72209
aromaticity:0,08974
hydropathy:-0,29231

Domains

Domains [InterPro]
IPR058640
TAS
5–137
IPR058640
IPR058640
TAS
5–135
IPR058640
YP_009818248.1
1 156
Architecture
TAS
TAS 5-137 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009818248.1
1 156
Domain Start End Length (AA) Confidence
N-terminal 1 82 82 0,4659
Central domain 83 145 64 0,1373
C-terminal 146 156 10 0,9948
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-82
Central
83-145
C-terminal
146-156

Taxonomy

  Name Taxonomy ID Lineage
Phage Lactobacillus phage Lpa804
[NCBI] 		2059850 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009818248.1 [NCBI]
Genbank nucleotide accession
NC_048134 [NCBI]
CDS location
range 127088 -> 127558
strand +
CDS
ATGGCAACACTTGCAAAGCAAACGGTTGAAACCGGTAACCGTATTTATATCATGATTAAGAACGAAGTTATTGGTCGTGCTCAATCATTAACTGGTGACCGCTCATTCGGTACCCAAGGTGTGTATGAACTTGGTTCAATCATGCCACATGAACACGTATTCTTAAAGTATACGGGTACGGTATCAGTTGAACGTTATCGGTTACGTACTGGTAATATGTCTGATAAGAAGATTGCTGCTCTAGGTGAAGATGTTTTGAAGATTGATATCTTAGATATTAATGTTAAGGATAACCAAACTGGTGCCTTAATCATCTGTTATCGTGGATGCTCAATTAACACCTACTCAGAAACTTATCGGGCTAACGATATTACTGGTGAATCCGCACAATTCTACTACTTGACTTCAAGTAACTTACAGAATGGTGGATACTCAACCTCTCAATTCAATACCGCTTCTGGTATTTCTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
7a5940049c880e177bdb3c1eb4791981fae3f57424dd27d44fd4605dbc9fe723
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6898
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation and Characterization of phages of Lactobacillus pentosus and plantarum Qi,R., Yu,M., Tang,T., Qiao,X. and Li,Y. 2012-01-19 — GenBank