Protein

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Genbank accession
YP_009101385.1 [GenBank]
Protein name
tail protein B
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MPVYQGSYKSILGGVSQQVYTDRQLSQVEEQVNMTSDTVRGLRKRPGTRLSRDVSSTNATVWSLGNFGHLRFYTTNLGWGITTFIVNTKTGYVTSIVETETVQFMGQSNYLIANNPDDIVFTTVGNTMYVANCSKLPVLIENETRMNPGRRGYYFVLAGSYGKQYTVRVQTTLGAVSATYTTPNADQTSASDHATPEYIISQLKSQLDAAVGGASGLEIVQADGAYLYLQCTEAAADMNVSTSTGSTYAIASNTHTVDLTTKLPARLPAAAGGFIMTVGDASFAQYFQWSYNDSRWVEKGAYGSPTGINPSTMPLVFKTSATTNQHTFAQGSWPGRLAGDDLTNAIPAFTDANGVGITGLASFQGRLIVFSGPYITMGSSNKDDRNNFFRTTVTQVLDDDRIEFTASSFAGASFRYGVPFNSDLILASEEHQAVIPGRNQILTPNNATAVLTSTYQMDTGVSPTTSGRSLYYSYPRSNSSFSVKEMLPSGYTDLQYVSQDVTDHLPTYLEGANSYISASTTNNIVVFGSTTEKSTLYVNEYLWSGDEKVLSSWHRWELYGTIHAAWFVREVLVVLVEQQGHMNMLTLSMRDSPDPTDPTRFLPATDYSQLMTVTNPATDSSYIQFAADGIQKALWDIIQARYLADGNWDFMTTVVPSGQYIGAEVGIKSIDTANRRVYLQPSYGSTSLYVGLRFTATFSPTPPRIFNGDGSYMDVNKMVIMHYNFTLRYTSLFTITASDRGAYSALNIISSPIRYTSQELGLESATLAKRAHLKVRMGLEVESSSMVVTSTTAGDLNIQGLGYYIKFYNKVRRI
Physico‐chemical
properties
protein length:814 AA
molecular weight: 89343,88450 Da
isoelectric point:5,74190
aromaticity:0,11057
hydropathy:-0,20086

Domains

Domains [InterPro]
IPR058003
TTP
1–814
IPR058003
DC_0058
STR
1–814
DC_0058
YP_009101385.1
1 814
Architecture
STR
STR 1-814
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009101385.1
1 814
Domain Start End Length (AA) Confidence
N-terminal 1 598 598 0,7487
Central domain 599 797 200 0,2749
C-terminal 798 814 16 0,8944
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-598
Central
599-797
C-terminal
798-814

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage J8-65
[NCBI] 		1536597 Uroviricota > Caudoviricetes > Autographivirales > Stentvirinae > Bonnellvirus
Host Escherichia coli K-12
[NCBI] 		83333 Bacteria > Proteobacteria > Gammaproteobacteria > Enterobacteriales > Enterobacteriaceae > Escherichia

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009101385.1 [NCBI]
Genbank nucleotide accession
NC_025445 [NCBI]
CDS location
range 24971 -> 27415
strand +
CDS
ATGCCAGTTTACCAAGGCTCGTATAAATCCATCCTCGGCGGCGTAAGCCAGCAGGTCTATACTGACCGACAGCTATCGCAGGTTGAGGAACAGGTCAACATGACCTCCGATACCGTTCGTGGCCTGCGCAAGCGCCCCGGCACTCGCCTAAGTCGTGACGTAAGTTCGACCAACGCGACTGTATGGAGCCTTGGAAATTTTGGCCACCTCCGGTTCTACACCACTAACTTAGGGTGGGGGATTACCACGTTCATCGTTAACACGAAGACCGGGTACGTGACCTCCATTGTAGAGACAGAGACTGTCCAGTTCATGGGGCAGTCGAATTATCTCATCGCAAATAACCCCGACGACATTGTATTCACGACCGTGGGCAACACCATGTACGTTGCCAACTGTTCCAAGCTGCCCGTGCTAATCGAGAACGAAACGCGAATGAATCCGGGTCGCCGGGGTTACTATTTCGTGCTGGCTGGTTCCTATGGGAAGCAGTACACAGTGCGCGTACAGACCACGCTCGGTGCCGTGAGCGCAACGTACACGACGCCCAATGCAGACCAGACCAGTGCGTCTGACCATGCAACGCCAGAGTACATCATCAGCCAGCTCAAGTCTCAGCTCGACGCCGCTGTGGGTGGTGCTTCTGGTCTTGAGATTGTTCAGGCTGATGGTGCGTACCTGTACCTGCAATGCACTGAGGCTGCGGCAGATATGAACGTGTCAACCTCGACAGGTTCAACGTACGCCATTGCATCCAACACCCACACTGTAGACCTGACCACAAAGCTCCCGGCGAGACTGCCTGCGGCGGCGGGTGGGTTCATCATGACTGTGGGCGACGCCAGCTTCGCTCAATACTTCCAGTGGAGTTACAATGACTCGCGCTGGGTTGAGAAAGGTGCCTACGGTTCCCCGACCGGGATTAACCCAAGCACCATGCCGCTGGTGTTCAAGACCTCCGCTACCACGAATCAGCACACTTTCGCTCAGGGTAGCTGGCCGGGCCGCTTGGCTGGTGATGACCTGACCAATGCCATCCCTGCATTCACCGATGCGAATGGTGTGGGTATCACTGGCTTGGCCTCGTTCCAAGGTCGCCTGATTGTATTTAGCGGCCCGTACATCACAATGGGTTCCAGCAACAAGGACGACCGGAACAACTTCTTCCGCACCACTGTTACGCAGGTGCTGGACGATGACCGCATTGAGTTCACAGCATCCAGCTTCGCCGGGGCTTCGTTCCGGTACGGGGTGCCGTTCAACTCTGACCTGATTCTGGCCAGTGAGGAACACCAAGCTGTCATCCCCGGACGCAACCAAATCCTGACGCCGAACAACGCCACCGCCGTGTTGACCTCGACGTACCAGATGGACACCGGGGTATCGCCGACCACCTCTGGCCGCAGCCTGTATTATTCGTACCCGCGCTCGAACAGCTCGTTCTCCGTCAAGGAGATGCTGCCGTCCGGTTACACGGATTTGCAGTACGTGAGTCAGGACGTGACCGACCACCTGCCGACTTATCTGGAAGGAGCTAACAGCTACATCTCTGCCAGCACCACGAACAACATCGTCGTGTTCGGCTCGACCACTGAGAAGTCCACGCTATACGTGAACGAGTACCTCTGGTCAGGCGATGAGAAGGTGCTGTCGTCTTGGCATCGCTGGGAGCTATACGGCACCATCCACGCCGCATGGTTCGTCCGTGAGGTTCTGGTTGTGCTGGTTGAGCAGCAGGGCCACATGAACATGCTCACGCTGTCCATGCGAGATTCTCCAGACCCGACTGACCCGACGCGTTTCCTCCCGGCAACGGATTACAGCCAGCTCATGACTGTGACCAACCCGGCGACGGACAGCTCGTACATCCAGTTCGCGGCTGACGGAATCCAGAAAGCGCTGTGGGATATCATCCAAGCCCGGTATCTGGCTGATGGCAACTGGGATTTCATGACCACGGTTGTGCCGTCCGGCCAGTACATCGGTGCCGAGGTTGGTATCAAGTCCATCGACACTGCGAACCGACGTGTGTACCTGCAACCTTCGTACGGCAGCACATCGCTGTATGTGGGCCTGCGATTCACTGCAACGTTCAGCCCTACGCCGCCGAGAATCTTCAACGGCGACGGTTCGTATATGGACGTGAATAAGATGGTCATCATGCACTACAACTTCACGTTGCGGTACACGAGCCTCTTCACCATCACGGCCAGTGACCGTGGGGCGTACTCCGCACTGAACATCATCTCCAGCCCGATTCGGTACACGAGTCAGGAGCTGGGTCTGGAGTCAGCAACTCTGGCGAAGCGTGCGCACCTCAAAGTGCGTATGGGTCTGGAGGTTGAGTCCAGCAGCATGGTGGTCACGTCCACTACGGCAGGCGACCTGAACATTCAAGGTTTAGGTTATTACATCAAGTTCTATAACAAGGTTCGGAGAATTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
2f878e01a0599a1e7f0075ac6b886a2cc750f755af4be2bbfdbe0ece7e77109e
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8639
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Synergy as a Rationale for Phage Therapy using Phage Cocktails Schmerer,M., Molineux,I.J. and Bull,J.J. — — GenBank