Protein

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Genbank accession
YP_224071.2 [GenBank]
Protein name
tail spike protein
RBP type
TSP
Evidence UniProt/TrEMBL
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MSSGCGDVLSLNDLQIAKKHQIFEAEVITGKQGGVAGGADIDYATNQVTGQTQKTLPAVLRDAGFSPASFNFTTGGTLGVNDADKAVLWPKEDGGDGNYYAWRGPLPKVIPAASTPLTTGGISDSAWVAFGDITFRAEADKKFKYSVKLSDFTTLQQLADAAVDSVLIDRDYTFSNNETVNFSGKTLTIDCKAKFIGDGNLVFTQLGKGSIVIAPFMESATTPWVIKPWTDDNQWITDPAAIVATLKQSKTDGYQPTVNDYAKFPGIESLLPPEAKGQSISSTLEIRECTGVEVHRASGLMACFLFRGCHFCKMVDADNPSGGKDGVITFENLSGDWGKGNYVIGGRTSYGSVSSAQFLRNNGGFARDGGVIGFTSYRAGESGVKTWQGTVGSTTSRNYNLQFRDSAVLYPVWDGFDLGADTDMNPEDDRPGDFPYSQYPVHMLPLNHLIDNLLVRGSLGVGFDMDGKGLYVSNITVEDCAGSGAYLLTHETVFTNIAIIDTNTKDFPANQIYISGACRVNGLRLVGIRSTSGQGLTIDAPNSTVSGITGFVDPSRINVANLMEEGLGNSRINSFNNDSAALRLRIHKLSKTLDSGSVYSHINGGPGSGSAWTEVTAISGSLPDAVSLKINRGDYRAVEIPVAMSALPDNAVRDNGSISLYLEGDSLKALVKRADGSYTRLTLA
Physico‐chemical
properties
protein length:684 AA
molecular weight: 72930,69450 Da
isoelectric point:5,06080
aromaticity:0,08772
hydropathy:-0,18129

Domains

Domains [InterPro]
G3DSA:2.10.10.80
ATT
65–135
G3DSA:2.10.10.80 IPR011050
IPR040775
RBD
71–132
IPR040775 IPR015331
IPR012332
STR
136–684
IPR012332
IPR015331
RBD
138–684
IPR015331
YP_224071.2
1 684
Architecture
ATT
STR
ATT 65-135 | STR 136-684
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_224071.2
1 684
Domain Start End Length (AA) Confidence
N-terminal 1 154 154 0,9938
Central domain 155 598 445 0,9870
C-terminal 599 684 85 0,8386
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-154
Central
155-598
C-terminal
599-684

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage SS3e
[NCBI] 		293644 Uroviricota > Caudoviricetes > Sarkviridae > Jerseyvirus > Jerseyvirus SS3e
Host Salmonella typhimurium
[NCBI] 		90371 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_224071.2 [NCBI]
Genbank nucleotide accession
NC_006940 [NCBI]
CDS location
range 30645 -> 32699
strand -
CDS
ATGTCCAGCGGTTGCGGTGATGTATTGTCACTTAATGATTTACAAATAGCTAAAAAACACCAGATTTTCGAAGCCGAGGTGATCACCGGTAAACAAGGCGGTGTAGCTGGTGGTGCGGATATCGACTACGCCACTAACCAGGTAACCGGGCAGACGCAGAAGACGCTTCCCGCAGTCTTACGTGATGCTGGTTTCTCCCCGGCATCTTTTAACTTTACGACCGGGGGTACTCTCGGCGTAAACGACGCGGATAAAGCGGTTCTTTGGCCGAAAGAAGATGGCGGGGACGGTAACTATTACGCATGGCGTGGCCCCCTGCCGAAAGTTATCCCTGCGGCGTCGACACCTCTTACGACAGGCGGCATTTCGGATTCCGCTTGGGTCGCGTTCGGAGATATTACCTTTCGCGCGGAAGCGGATAAGAAATTTAAATACTCCGTTAAGCTGTCCGACTTTACTACGTTACAACAATTGGCGGATGCCGCCGTTGATAGCGTTCTTATCGACCGCGATTACACTTTCAGTAATAACGAGACCGTTAACTTCAGCGGGAAGACCCTGACCATCGACTGTAAAGCGAAGTTTATCGGCGACGGAAACCTGGTATTTACGCAATTAGGTAAAGGTTCCATTGTAATAGCCCCCTTTATGGAGAGTGCTACAACGCCGTGGGTGATTAAACCGTGGACCGACGATAATCAGTGGATAACCGACCCCGCGGCAATCGTGGCCACACTTAAACAGTCTAAAACAGATGGATACCAGCCGACGGTAAACGATTACGCCAAGTTTCCTGGTATAGAATCCCTTCTCCCTCCGGAAGCTAAAGGGCAAAGCATATCTTCTACCCTGGAAATTCGGGAATGTACAGGCGTCGAGGTTCACCGGGCGAGTGGTCTTATGGCGTGTTTCCTGTTCCGCGGATGCCATTTCTGTAAGATGGTAGACGCTGACAACCCGAGCGGCGGAAAAGATGGCGTAATTACCTTTGAAAACCTGAGCGGCGATTGGGGCAAGGGTAACTATGTTATTGGCGGGCGCACAAGTTACGGTTCGGTAAGTAGCGCTCAATTCTTACGAAACAATGGCGGTTTCGCGCGCGATGGCGGGGTCATCGGGTTTACCTCGTATCGCGCCGGCGAAAGTGGTGTTAAAACATGGCAAGGCACGGTAGGTTCTACGACCTCTCGTAACTACAACCTGCAATTCCGGGATTCGGCGGTGCTATACCCTGTATGGGACGGCTTCGATTTAGGCGCAGATACCGACATGAACCCAGAAGATGACCGCCCGGGGGATTTCCCGTATTCTCAATACCCGGTACATATGCTCCCCCTAAACCATTTGATCGACAATCTACTGGTTAGGGGTTCTTTGGGCGTAGGTTTCGACATGGATGGGAAAGGTCTGTATGTCTCTAACATAACCGTCGAGGATTGCGCTGGTTCGGGTGCATATCTTCTTACTCACGAAACGGTATTCACTAATATTGCTATAATCGACACAAATACTAAAGATTTTCCAGCGAATCAGATCTACATCTCCGGGGCCTGCCGTGTGAACGGTCTTCGTTTGGTAGGCATACGCTCCACTAGTGGACAGGGGTTGACGATAGACGCGCCTAACTCCACGGTAAGTGGTATAACCGGCTTCGTAGACCCCTCAAGGATTAACGTAGCCAATTTGATGGAGGAAGGTCTTGGTAACTCTCGCATAAACAGTTTCAATAATGATTCTGCGGCGCTTCGGTTACGGATACATAAACTGTCAAAGACCCTTGATAGTGGTTCCGTGTACTCCCACATAAACGGCGGCCCAGGTTCTGGTTCAGCGTGGACAGAAGTCACAGCTATTTCGGGCAGCTTGCCCGATGCCGTGTCATTAAAAATAAATAGGGGCGATTATCGTGCTGTTGAGATACCGGTAGCGATGTCCGCCCTACCAGACAACGCTGTCAGGGATAACGGGTCTATATCACTGTATCTGGAAGGCGATAGCCTTAAGGCGTTAGTTAAGCGGGCCGATGGAAGCTATACAAGATTAACTTTGGCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
06a387dcbd7f1b8eb760ed0123817635c888942b3a9d3b8b2c56e616b6e3488c
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6948
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete Genome Sequence of Salmonella Bacteriophage SS3e Kim,S.H., Park,J.H., Lee,B.K., Kwon,H.J., Shin,J.H., Kim,J. and Kim,S. 2012 22923809 GenBank
Therapeutic Effect of Bacteriophage from Salmonella Typhimurium Kim,S., Kim,S.H., Chun,S.G., Lee,S.W., Kang,Y.H. and Lee,B.K. 2012-01-15 — GenBank