Protein

View in Explore
Genbank accession
QNI21189.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect
Probability 0,83
Protein sequence
MSTTTPEILGDSGTIAILHVFQKDGPVDLEITLGATTTGATSINVEVKNLDFGLTYDTLEFTGLTSTTSTVTKTITVAGTTGEVVGLVANQTGGTNVWVDSSIAVPTTGIEHATAGSRNIWMSANTSLYVYEQNAWVQMANDPGISAISALGIDATSDSALVVDSAGNKIYRVTRDDVWTDVTNGEDVSTVDCIAGTGDTEIAITKADGSIRVYDGSAWTDRNDNSQRALYIQYDAFSNLRYRRAVAPYTEKTWSGSSWDGVSGFGTVTALHYAFRGTVPSDDLTVAGITNAGSNWTQTENRIRYGDGTAHEWTNDPDPSVINYQGGFHLGTDEHIVHDDKIVTVDTQYEINFEGLSVTEVVQTNGPHVHHLMRETILAPDAGPHVHHLMREAILTPVLAKATLQKQAVSVVIKPPPPEVTLQKQAVSVVVQPKPANLKLQKQTVSVVLEPLPPELKLQKQTISVVLEAKPAGPYVNHLVSEAVLKPDPGPAVKHIVSEAVLKPDPGPAIKHMVSEAVLVKAEELKVLKQTAYAVLKPKSGPNILKQSGYAVLKPKTGPNVLKQSAYAVLRPSLVNRVHKQSVTVLMKPKTAVSLHKASVTVLVRTIPLRKKRRFVSQHVVEIKSS
Physico‐chemical
properties
protein length:626 AA
molecular weight: 67376,61570 Da
isoelectric point:6,44835
aromaticity:0,05591
hydropathy:-0,14201

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QNI21189.1
1 626
Domain Start End Length (AA) Confidence
N-terminal 1 288 288 0,1382
Central domain 289 519 232 0,1431
C-terminal 520 626 106 0,0401
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-288
Central
289-519
C-terminal
520-626

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage vB_pir03
[NCBI] 		2762667 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Vibrio harveyi
[NCBI] 		669 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QNI21189.1 [NCBI]
Genbank nucleotide accession
MT811961 [NCBI]
CDS location
range 212654 -> 214534
strand -
CDS
ATGAGTACAACAACACCAGAAATTCTTGGTGATTCAGGTACAATTGCCATACTGCATGTCTTTCAAAAAGACGGACCAGTAGACTTAGAGATTACTTTAGGTGCCACTACCACGGGTGCCACGTCAATTAACGTGGAAGTTAAGAACCTTGATTTTGGTCTTACTTACGACACACTTGAGTTTACTGGCCTGACTAGTACCACGTCAACAGTTACGAAAACAATAACTGTGGCAGGTACAACAGGGGAAGTAGTTGGTTTGGTGGCCAATCAAACAGGCGGTACAAACGTCTGGGTTGATTCTAGTATTGCAGTGCCAACCACTGGCATTGAGCATGCAACTGCTGGCTCACGTAACATCTGGATGTCGGCTAATACCAGTCTTTATGTTTATGAACAAAACGCCTGGGTACAGATGGCCAATGATCCTGGCATCAGTGCCATTAGTGCACTTGGTATTGATGCAACGTCAGACAGTGCCCTTGTGGTTGATTCTGCTGGCAATAAGATCTATCGTGTTACACGTGATGATGTTTGGACCGACGTAACCAATGGCGAAGATGTTTCTACTGTAGACTGTATTGCTGGTACAGGCGATACTGAAATTGCCATTACTAAAGCAGATGGTTCGATTCGTGTTTATGATGGCTCTGCTTGGACAGACAGAAACGACAACAGTCAACGTGCTTTGTACATCCAGTATGACGCTTTCAGTAACTTACGTTATCGTCGAGCTGTGGCCCCATATACCGAGAAGACCTGGAGTGGTTCATCCTGGGATGGTGTGTCCGGTTTTGGTACTGTGACAGCGCTACACTATGCTTTCCGTGGTACTGTACCGTCTGACGACCTTACTGTAGCTGGTATTACTAATGCTGGTAGCAATTGGACGCAAACAGAAAACCGCATTCGCTATGGCGATGGCACTGCTCATGAATGGACCAACGACCCAGATCCTTCTGTGATCAATTACCAAGGTGGCTTCCACTTAGGTACTGACGAACACATTGTCCATGATGACAAGATCGTTACAGTTGATACACAATACGAAATCAATTTCGAAGGTCTAAGTGTTACAGAGGTAGTACAGACGAATGGTCCACACGTACATCACTTGATGCGTGAAACAATACTGGCACCTGATGCTGGTCCTCATGTTCATCACTTGATGCGCGAGGCGATACTTACACCTGTCTTGGCAAAAGCAACATTGCAGAAGCAAGCAGTATCGGTTGTTATCAAGCCACCACCACCCGAAGTCACACTTCAGAAGCAAGCTGTCTCGGTTGTTGTTCAACCTAAACCAGCCAATCTGAAACTCCAGAAGCAAACCGTTTCCGTAGTATTGGAACCTTTGCCACCCGAACTAAAACTTCAGAAGCAAACGATCTCGGTTGTACTGGAAGCTAAACCTGCTGGTCCATACGTTAACCATCTTGTATCGGAAGCCGTACTAAAACCAGATCCAGGCCCAGCTGTAAAACATATTGTTTCGGAAGCAGTCTTGAAACCTGACCCAGGTCCGGCAATCAAGCATATGGTTTCAGAAGCAGTATTGGTGAAGGCTGAAGAACTGAAGGTATTGAAACAGACAGCTTATGCGGTATTGAAACCTAAGTCAGGTCCAAATATTCTTAAGCAATCTGGTTATGCGGTACTGAAGCCTAAGACTGGCCCTAACGTACTTAAGCAGTCTGCTTATGCTGTACTGCGTCCGTCTCTGGTTAACCGAGTACACAAACAGTCCGTTACTGTATTGATGAAGCCTAAGACGGCTGTATCGCTACACAAAGCTTCTGTGACGGTCCTTGTACGTACGATTCCGCTTAGGAAGAAACGTCGCTTTGTTTCACAGCATGTCGTGGAGATTAAATCATCATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
728dbe8fe4069f971f39af0ce6d7924ac477c7869326df31bb7caf37aefd61b4
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5025
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Biological and genomic characterization of a novel jumbo bacteriophage, vB_pir03 with broad host lytic activity against Vibrio harveyi N Misol,G. Jr., Katharios,P. and Kokkari,K. 2020-12-15 — GenBank