Protein

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Genbank accession
UIS65496.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,76
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MAQRRALVIAAGRVQELPSADSLQGVAQWSFGTGDPSDAAGAQGDYYVGSDNKLWSKGATTWTFTGVQYGSSAAVPEKTVPVDADILSLGDSANGLQMRKLTWGNMRAALPFREKLTAARTYYVRTDGNDSNTGLANTSAGAFLTIQKAVDTVGALDSAIYGITISVAAGSYSPFTTKDPIGAGVVAIVGAGVATTGVSTSSGPCITVPGGSTKYIISGFKLSSSDTGPAGDAISVGIGGSVLAYALEFGACGNFHVNCSGAITLQSYSISGGARIHWYASNAAKIICAGFTITLSGTPAFSIAFAYGDCLSLLRVNANTFSGAATGQRYQVSINAAIYVNGAGASYLPGSTAGAASSGGQYA
Physico‐chemical
properties
protein length:363 AA
molecular weight: 36632,47500 Da
isoelectric point:7,56507
aromaticity:0,09091
hydropathy:0,17824

Domains

Domains [InterPro]
IPR012334
STR
110–356
IPR012334
IPR011050
STR
116–323
IPR011050
IPR011050
STR
120–323
IPR011050
UIS65496.1
1 363
Architecture
STR
STR 110-356 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
UIS65496.1
1 363
Domain Start End Length (AA) Confidence
N-terminal 1 157 157 0,8066
Central domain 158 352 196 0,8866
C-terminal 353 363 10 0,9913
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-157
Central
158-352
C-terminal
353-363

Taxonomy

  Name Taxonomy ID Lineage
Phage Acidovorax phage AP1
[NCBI] 		2908629 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Paracidovorax oryzae
[NCBI] 		862720 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Betaproteobacteria > Burkholderiales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
UIS65496.1 [NCBI]
Genbank nucleotide accession
OM049504.1 [NCBI]
CDS location
range 43083 -> 44174
strand +
CDS
ATGGCGCAGCGCAGGGCTCTCGTCATCGCGGCTGGGCGCGTCCAGGAGCTACCCTCTGCCGACTCTCTGCAGGGAGTGGCGCAGTGGTCGTTCGGCACTGGAGATCCCAGCGATGCAGCGGGCGCGCAGGGCGACTACTACGTCGGCTCTGACAACAAGCTCTGGAGCAAGGGCGCGACCACCTGGACGTTCACGGGCGTGCAGTACGGCTCATCGGCGGCGGTGCCAGAAAAGACGGTCCCGGTCGATGCCGACATCTTGAGCCTTGGCGATTCTGCCAATGGGCTCCAGATGCGGAAGCTGACCTGGGGCAACATGCGCGCGGCATTGCCATTCCGGGAAAAGCTTACCGCCGCGCGAACCTACTACGTGCGGACGGACGGCAACGACAGCAACACGGGGTTGGCAAATACCAGCGCTGGCGCCTTCCTCACAATTCAAAAGGCGGTCGATACGGTCGGCGCGCTCGACTCTGCAATCTACGGCATCACCATTTCTGTGGCTGCGGGCAGCTATTCCCCATTCACCACCAAGGACCCAATCGGGGCTGGTGTGGTCGCGATCGTAGGCGCTGGCGTAGCGACGACAGGCGTGTCTACATCTTCTGGCCCCTGCATCACCGTCCCCGGCGGTTCCACCAAATACATCATCTCGGGTTTCAAGCTATCGAGCTCAGACACGGGGCCCGCTGGTGACGCGATCTCTGTTGGTATCGGAGGTTCCGTCTTGGCATACGCGCTCGAGTTCGGAGCATGCGGCAATTTCCATGTCAACTGCTCCGGCGCCATCACGTTGCAAAGCTACTCTATTTCCGGAGGCGCACGGATCCACTGGTACGCATCAAACGCCGCGAAGATCATTTGCGCAGGCTTCACCATCACGCTTTCGGGAACACCCGCTTTCTCCATCGCGTTCGCTTATGGGGACTGCCTGTCGTTGCTGCGTGTCAACGCAAACACATTCTCCGGCGCAGCAACGGGCCAGCGGTATCAGGTGTCCATCAACGCCGCGATCTATGTGAACGGCGCTGGCGCGAGCTACCTTCCAGGGAGCACAGCCGGTGCGGCGTCCTCAGGAGGGCAGTACGCATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
67c2862261351483c4a732690688aa541709d90a4cf0dab56289db9e41119795
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,9106
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Identification and Characterization of a New Type of Holin-Endolysin Lysis Cassette in Acidovorax oryzae Phage AP1 Zhang,M., Wang,Y., Chen,J., Hong,X., Xu,X., Wu,Z., Ahmed,T., Loh,B., Leptihn,S., Hassan,S., Hassan,M.M., Sun,G. and Li,B. 2022 35215761 GenBank