Protein

View in Explore
Genbank accession
UPT53192.1 [GenBank]
Protein name
tail spike protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,83
TSP
Evidence RBPdetect2
Probability 0,93
Protein sequence
MTLVTPATVEAAIAAAPDGATLVLAGVFPVLPLSKRKPNLTLDCTQAEVLSALRTGDPTKPIDGLHIQGGLFRQGMVFTCGRNVSVIGARIEGGGEARTFNGVGAYGIVGLLIKGNTFRDGLNGVVVSDSSDFDIDGNDFARIRKDVVNISCSPRGMVRRNKVRDHRPLNIGLPNADHPDFVQMLNIAGKTPTTDILVEGNDVEIANGQGATPTHKASKGDPRFARITYRKNTIRAGQPVGLGMIAVDGGALEDNSVETLPGSPYISRIFVSDDCTDIAWIGKNTHAAYGKTEGKDWPPTVKPDPRDAEIARLEAELAAARAEDVAEDAAYEARIGDLEAKVAAVRAAVAQ
Physico‐chemical
properties
protein length:351 AA
molecular weight: 37070,54450 Da
isoelectric point:5,65078
aromaticity:0,04843
hydropathy:-0,15556

Domains

Domains [InterPro]
IPR011050
STR
7–249
IPR011050
IPR012334
STR
7–288
IPR012334
IPR011050
STR
7–255
IPR011050
UPT53192.1
1 351
Architecture
STR
STR 7-288 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
UPT53192.1
1 351
Domain Start End Length (AA) Confidence
N-terminal 1 10 10 0,8372
Central domain 11 299 290 0,8951
C-terminal 300 351 51 0,9648
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-10
Central
11-299
C-terminal
300-351

Taxonomy

  Name Taxonomy ID Lineage
Phage Synechococcus phage Yong-M4-211
[NCBI] 		2928849 No lineage information
Host Synechococcus sp. PCC 7002
[NCBI] 		32049 Cyanobacteriota > Cyanophyceae > Chroococcales > Geminocystaceae > Picosynechococcus >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
UPT53192.1 [NCBI]
Genbank nucleotide accession
OM868079.1 [NCBI]
CDS location
range 31350 -> 32405
strand -
CDS
ATGACCCTCGTCACGCCCGCCACCGTCGAGGCCGCCATCGCTGCGGCCCCCGACGGCGCAACCCTGGTGCTGGCCGGGGTCTTCCCGGTCCTGCCGCTGAGCAAGCGCAAGCCGAACCTGACGCTGGACTGCACGCAGGCCGAAGTCCTGTCCGCGCTGCGAACCGGCGACCCCACCAAGCCGATCGACGGGCTGCACATCCAAGGCGGGCTGTTCCGGCAGGGCATGGTCTTCACGTGCGGGCGAAACGTCAGCGTCATCGGCGCCAGGATCGAGGGCGGCGGTGAGGCGCGGACCTTCAACGGCGTCGGCGCCTACGGGATCGTCGGCCTGCTGATCAAGGGCAACACCTTCCGCGACGGCCTGAACGGCGTGGTCGTTTCAGACTCCTCGGACTTCGACATCGACGGGAACGACTTCGCCCGGATCCGCAAGGACGTGGTGAACATCTCCTGCAGCCCACGCGGCATGGTGCGCCGGAACAAGGTCCGCGATCACCGCCCGCTCAACATCGGCCTGCCGAACGCCGATCACCCCGACTTCGTCCAGATGCTGAACATTGCGGGCAAGACGCCCACGACCGACATCCTGGTCGAGGGGAACGACGTCGAGATCGCGAACGGGCAGGGCGCGACGCCGACCCACAAGGCCAGCAAGGGCGACCCGCGCTTCGCCCGCATCACCTACCGCAAGAACACGATCCGCGCCGGCCAGCCGGTCGGCCTGGGCATGATCGCGGTCGACGGCGGCGCGCTGGAAGACAACAGCGTTGAGACCCTTCCAGGCTCGCCCTACATCTCGCGCATCTTCGTATCCGACGACTGCACCGACATCGCGTGGATCGGCAAGAACACCCACGCCGCCTACGGCAAGACCGAGGGCAAGGACTGGCCGCCCACCGTGAAGCCCGACCCGCGCGACGCCGAGATCGCCCGGCTGGAAGCCGAACTGGCAGCGGCCAGGGCCGAGGACGTCGCCGAAGACGCAGCTTACGAGGCCCGGATCGGCGACCTCGAGGCCAAGGTGGCAGCCGTGCGCGCTGCCGTCGCCCAATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
232c776b25a1f2916d40d5273ee6bd0533f7f0412d3888d7b179103e8d4e11ef
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8726
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genomic analysis of Synechococcus cyanophage Yong-M4-211 Pan,L., Li,D., Lin,W., Qu,C., Cai,R., Qian,M., Wang,F., Zhou,Q., Liu,W. and Tong,Y. 2024-11 — GenBank