Protein
- Genbank accession
- AGN30020.1 [GenBank]
- Protein name
- short tail fibers
- RBP type
-
TFTF
- Protein sequence
-
MSGTNIFTHISDEAQYVYLQPFVSPGAAFESGGDVQSIIAQINESALQPIPALPYATTSEDGAVEYSTQAEANGLSSLLTVLTPESLDWVDQFVSPATDTQLGNLQELSSGDLTRDYATSNASKLLSYRRLDEMMTVRAALTDDGTDQSRGFLEFANLSESLAYASDKFISPLRTWNLIKQEIPNPWSQATESAVGILRTVAPRDGKRSDPSIAITVGGLNHVDASTSKRGAFKLTSNNYNRTASDANEYVVTPGTISNLIATAGQVGFMQLPASYVNDPLLTTNAALGVDLATKLGPDGGTITGTLQCDNIQSRLTYRQKQTSYSGTYYTTVVEDREMFPSNQLDSKIGLAGRPVGSIFHCTANVDPNTVFGGVWYRVRAGQTMMGQGTGDDGARRRYFAAGAQRNDDTITLTQRNLPTHKHAGFGEAYKSVNGDCVRYTILRNPYGVSLYCTEYSRAEYWEFGSTGERNHRGMRKTDSDNYLYYNEPVGGGQAHENMMPYQAVYIWRRVK
- Physico‐chemical
properties -
protein length: 512 AA molecular weight: 56021,44640 Da isoelectric point: 5,24109 aromaticity: 0,09375 hydropathy: -0,43457
Domains
Domains [InterPro]
Legend:
Pfam
SMART
CDD
TIGRFAM
HAMAP
SUPFAM
PRINTS
Gene3D
PANTHER
Other
Taxonomy
| Name | Taxonomy ID | Lineage | |
|---|---|---|---|
| Phage |
Vibrio phage nt-1 [NCBI] |
115992 | Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes |
| Host |
Vibrio natriegens [NCBI] |
691 | Bacteria > Proteobacteria > Gammaproteobacteria > Vibrionales > Vibrionaceae > Vibrio |
Coding sequence (CDS)
Coding sequence (CDS)
Genbank protein accession
AGN30020.1
[NCBI]
Genbank nucleotide accession
HQ317393.2
[NCBI]
CDS location
range 127489 -> 129027
strand +
strand +
CDS
ATGTCAGGAACAAACATATTCACGCACATTAGTGACGAGGCTCAATATGTTTACCTGCAACCGTTCGTATCGCCTGGCGCAGCTTTTGAGTCAGGCGGTGACGTACAAAGTATCATAGCTCAAATTAACGAAAGCGCACTACAACCAATTCCTGCATTACCTTACGCGACGACTAGCGAAGATGGGGCAGTTGAATATTCAACCCAAGCTGAAGCTAATGGTCTGAGCAGTCTTTTGACAGTGCTAACACCTGAATCTCTAGATTGGGTAGATCAGTTCGTATCGCCGGCTACTGATACTCAGTTGGGTAACTTACAAGAGCTGAGTTCTGGCGATTTGACTCGCGATTATGCAACGTCAAACGCAAGTAAATTGCTTTCATATCGTCGTCTAGATGAAATGATGACTGTTCGTGCTGCACTCACTGATGATGGCACAGACCAGTCTCGTGGATTTCTTGAATTTGCAAATTTATCAGAATCATTAGCGTATGCATCTGATAAGTTCATTTCACCACTTAGAACATGGAATTTAATCAAGCAAGAAATTCCAAACCCATGGTCTCAAGCAACTGAATCAGCAGTCGGTATTCTCAGAACAGTTGCTCCTCGTGATGGGAAACGTTCTGATCCGTCAATTGCAATTACTGTAGGTGGGTTAAATCATGTTGACGCAAGCACTTCAAAACGCGGTGCATTTAAATTAACATCAAACAACTACAATCGAACCGCAAGTGATGCTAACGAGTATGTAGTAACGCCCGGTACTATTTCAAATCTAATTGCGACAGCAGGTCAAGTTGGGTTTATGCAATTGCCTGCATCATACGTCAATGATCCACTGTTGACAACAAACGCTGCTCTAGGTGTTGATTTAGCAACAAAGTTGGGTCCTGACGGTGGTACTATCACTGGTACATTACAGTGTGATAATATCCAAAGTCGCTTGACATACAGACAAAAACAAACAAGCTATAGTGGCACATATTACACAACGGTCGTTGAAGATCGCGAAATGTTCCCGAGTAATCAGTTAGATTCTAAAATAGGTCTTGCTGGTAGACCAGTAGGCAGTATTTTCCATTGTACTGCAAACGTAGACCCAAACACTGTATTTGGCGGCGTGTGGTATAGAGTACGCGCAGGTCAAACAATGATGGGACAAGGTACTGGCGATGACGGTGCGAGACGACGTTACTTTGCAGCAGGCGCGCAACGCAATGACGATACCATTACGCTGACGCAGCGCAATCTACCGACTCACAAACACGCTGGGTTCGGAGAAGCGTATAAATCTGTAAATGGCGACTGTGTTCGTTACACGATTTTAAGAAACCCGTATGGGGTGTCTTTGTATTGTACTGAATATTCACGCGCAGAGTACTGGGAATTTGGTTCTACGGGAGAACGAAATCATAGGGGTATGCGTAAAACAGATAGTGACAATTACCTATATTACAATGAGCCTGTTGGTGGTGGTCAAGCACATGAAAACATGATGCCATATCAAGCTGTTTACATTTGGAGACGAGTTAAATGA
Gene Ontology
No Gene Ontology terms available.
Enzymatic activity
No enzymatic activity data available.
Tertiary structure
PDB ID
322956d2aac66649e0cb15322d26ba72510da096acecc5ae28256f61ca20fb5b
Literature
| Title | Authors | Date | PMID | Source |
|---|---|---|---|---|
| Composite conserved promoter-terminator motifs (PeSLs) that mediate modular shuffling in the diverse T4-like myoviruses | Comeau,A.M., Arbiol,C. and Krisch,H.M. | 2014 | 24951563 | GenBank |
| The Genome Sequence of Vibrio phage nt-1 | Henn,M.R., Krisch,H.R., Comeau,A., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Chapman,S.B., Erlich,R., Young,S.K., Yandava,C., Zeng,Q., Fitzgerald,M.F., Alvarado,L., Anderson,S., Berlin,A., Chen,Z., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heilman,E.R., Heiman,D., Hollinger,A., Howarth,C., Larson,L., Mehta,T., Neiman,D., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., White,J., Haas,B., Nusbaum,C. and Birren,B. | 2011-09-23 | — | GenBank |