Protein

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Genbank accession
AGN30020.1 [GenBank]
Protein name
short tail fibers
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence RBPdetect
Probability 0,84
Protein sequence
MSGTNIFTHISDEAQYVYLQPFVSPGAAFESGGDVQSIIAQINESALQPIPALPYATTSEDGAVEYSTQAEANGLSSLLTVLTPESLDWVDQFVSPATDTQLGNLQELSSGDLTRDYATSNASKLLSYRRLDEMMTVRAALTDDGTDQSRGFLEFANLSESLAYASDKFISPLRTWNLIKQEIPNPWSQATESAVGILRTVAPRDGKRSDPSIAITVGGLNHVDASTSKRGAFKLTSNNYNRTASDANEYVVTPGTISNLIATAGQVGFMQLPASYVNDPLLTTNAALGVDLATKLGPDGGTITGTLQCDNIQSRLTYRQKQTSYSGTYYTTVVEDREMFPSNQLDSKIGLAGRPVGSIFHCTANVDPNTVFGGVWYRVRAGQTMMGQGTGDDGARRRYFAAGAQRNDDTITLTQRNLPTHKHAGFGEAYKSVNGDCVRYTILRNPYGVSLYCTEYSRAEYWEFGSTGERNHRGMRKTDSDNYLYYNEPVGGGQAHENMMPYQAVYIWRRVK
Physico‐chemical
properties
protein length:512 AA
molecular weight: 56021,44640 Da
isoelectric point:5,24109
aromaticity:0,09375
hydropathy:-0,43457

Domains

Domains [InterPro]
DC_0176
STR
1–465
DC_0176
IPR053827
ATT
355–511
IPR053827
IPR044916
STR
378–499
IPR044916
AGN30020.1
1 512
Architecture
STR
ATT
STR 1-354 | ATT 355-511 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage nt-1
[NCBI] 		115992 Uroviricota > Caudoviricetes > Pantevenvirales > Mylasvirus > Mylasvirus persius
Host Vibrio natriegens
[NCBI] 		691 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AGN30020.1 [NCBI]
Genbank nucleotide accession
HQ317393.2 [NCBI]
CDS location
range 127489 -> 129027
strand +
CDS
ATGTCAGGAACAAACATATTCACGCACATTAGTGACGAGGCTCAATATGTTTACCTGCAACCGTTCGTATCGCCTGGCGCAGCTTTTGAGTCAGGCGGTGACGTACAAAGTATCATAGCTCAAATTAACGAAAGCGCACTACAACCAATTCCTGCATTACCTTACGCGACGACTAGCGAAGATGGGGCAGTTGAATATTCAACCCAAGCTGAAGCTAATGGTCTGAGCAGTCTTTTGACAGTGCTAACACCTGAATCTCTAGATTGGGTAGATCAGTTCGTATCGCCGGCTACTGATACTCAGTTGGGTAACTTACAAGAGCTGAGTTCTGGCGATTTGACTCGCGATTATGCAACGTCAAACGCAAGTAAATTGCTTTCATATCGTCGTCTAGATGAAATGATGACTGTTCGTGCTGCACTCACTGATGATGGCACAGACCAGTCTCGTGGATTTCTTGAATTTGCAAATTTATCAGAATCATTAGCGTATGCATCTGATAAGTTCATTTCACCACTTAGAACATGGAATTTAATCAAGCAAGAAATTCCAAACCCATGGTCTCAAGCAACTGAATCAGCAGTCGGTATTCTCAGAACAGTTGCTCCTCGTGATGGGAAACGTTCTGATCCGTCAATTGCAATTACTGTAGGTGGGTTAAATCATGTTGACGCAAGCACTTCAAAACGCGGTGCATTTAAATTAACATCAAACAACTACAATCGAACCGCAAGTGATGCTAACGAGTATGTAGTAACGCCCGGTACTATTTCAAATCTAATTGCGACAGCAGGTCAAGTTGGGTTTATGCAATTGCCTGCATCATACGTCAATGATCCACTGTTGACAACAAACGCTGCTCTAGGTGTTGATTTAGCAACAAAGTTGGGTCCTGACGGTGGTACTATCACTGGTACATTACAGTGTGATAATATCCAAAGTCGCTTGACATACAGACAAAAACAAACAAGCTATAGTGGCACATATTACACAACGGTCGTTGAAGATCGCGAAATGTTCCCGAGTAATCAGTTAGATTCTAAAATAGGTCTTGCTGGTAGACCAGTAGGCAGTATTTTCCATTGTACTGCAAACGTAGACCCAAACACTGTATTTGGCGGCGTGTGGTATAGAGTACGCGCAGGTCAAACAATGATGGGACAAGGTACTGGCGATGACGGTGCGAGACGACGTTACTTTGCAGCAGGCGCGCAACGCAATGACGATACCATTACGCTGACGCAGCGCAATCTACCGACTCACAAACACGCTGGGTTCGGAGAAGCGTATAAATCTGTAAATGGCGACTGTGTTCGTTACACGATTTTAAGAAACCCGTATGGGGTGTCTTTGTATTGTACTGAATATTCACGCGCAGAGTACTGGGAATTTGGTTCTACGGGAGAACGAAATCATAGGGGTATGCGTAAAACAGATAGTGACAATTACCTATATTACAATGAGCCTGTTGGTGGTGGTCAAGCACATGAAAACATGATGCCATATCAAGCTGTTTACATTTGGAGACGAGTTAAATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
322956d2aac66649e0cb15322d26ba72510da096acecc5ae28256f61ca20fb5b
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6269
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Composite conserved promoter-terminator motifs (PeSLs) that mediate modular shuffling in the diverse T4-like myoviruses Comeau,A.M., Arbiol,C. and Krisch,H.M. 2014 24951563 GenBank
The Genome Sequence of Vibrio phage nt-1 Henn,M.R., Krisch,H.R., Comeau,A., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Chapman,S.B., Erlich,R., Young,S.K., Yandava,C., Zeng,Q., Fitzgerald,M.F., Alvarado,L., Anderson,S., Berlin,A., Chen,Z., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heilman,E.R., Heiman,D., Hollinger,A., Howarth,C., Larson,L., Mehta,T., Neiman,D., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., White,J., Haas,B., Nusbaum,C. and Birren,B. 2011-09-23 — GenBank