Protein

View in Explore
Genbank accession
WPK37745.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,77
TF
Evidence RBPdetect2
Probability 0,63
Protein sequence
MAFDTIKIAELPSATQVVGDDYLVVEQPDKTKKATVSQVISDLDLANKGDLAADGGASLIGTSDGTHVQQSLDTARANERELWRRALHDLGLTLVEGSFEDGATLTYANDAIWHIAGAQCYTWGGTFPKTVPEKSTPSTTGGVSASAWVTVGGLSLLDEVTEIKNEAVEAKDQAEDARDEAQAYALQASELGNLYASVSEGLAATTDGQYFQVPQGSGSSVAFKVYKNNAGVAQEVAAVPGTGAIINTIRGYESLAVAQNEVAAGNIPNGAHCWVRNSSDSTLANEYVNNSGVLNPTDRLIARDDYAYQISSNSVALAGYDPETKRVAPFLNAAGRLIQIGPDGKYYEVLTPQEAELYALGTEGAVPQFIGGEKVWRMIVDATTNQIVEAYTVGGHHWIYSDSGLVLVNQESGGGGGDDMTILPEYGLHLSGSTAYPYSEDVPVCFIFVTAGQSNARGYCPDADQTIIASTPVYPDNAFMLSGGVRRTGARSTTLVPLVEAVSGTDKETAASGLANTFIRDMAAATGIMPRTLSIVCAQSGQAYEYQKRGNAVYQYMLDSIEDCVTACKARGWLPIVLCVDWMQGESDEDWSGLREGMYESRMKQYQRQVISDIMARTGQNEPPIIAITQLGYVNDGHGAFTGQRVRMSVNNLHGREQFRCVNTLYQYDFITDGLHLTCAAQNKRGAAVARAIIQEWFTSGWYGMVPNGFVWNSPTQIQINIPSYTNLVIDTTNISIDGLANYGFNYTDESASPPAISSIAISSDGKGVLINLASAPTGRFGRVSYATVENPLQSGATVKPSGKTLGARGCVRSSAGIAWVYDTSVTLYDWLPAFRINVF
Physico‐chemical
properties
protein length:840 AA
molecular weight: 89973,24080 Da
isoelectric point:4,69117
aromaticity:0,08690
hydropathy:-0,15750

Domains

Domains [InterPro]
DC_0079
ATT
3–40
DC_0079 DC_1280 SSF52266
G3DSA:2.10.10.80
ATT
92–161
G3DSA:2.10.10.80 IPR036514
IPR040775
RBD
95–152
IPR040775 Coil IPR005181
DC_0547
STR
144–831
DC_0547
WPK37745.1
1 840
Architecture
ATT
ATT
STR
ATT 3-40 | ATT 66-164 | STR 165-831 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WPK37745.1
1 840
Domain Start End Length (AA) Confidence
N-terminal 1 682 682 0,7109
Central domain 683 829 148 0,4490
C-terminal 830 840 10 0,5292
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-682
Central
683-829
C-terminal
830-840

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage AV124
[NCBI] 		3077269 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WPK37745.1 [NCBI]
Genbank nucleotide accession
OR352954.1 [NCBI]
CDS location
range 101514 -> 104036
strand -
CDS
ATGGCCTTTGATACAATTAAAATTGCGGAGTTACCCTCCGCAACCCAAGTGGTCGGAGACGACTACCTTGTTGTAGAACAACCAGATAAGACCAAAAAGGCCACTGTCTCCCAGGTTATCTCCGACTTAGACTTGGCTAACAAAGGGGATTTGGCGGCGGATGGCGGTGCCTCCCTTATAGGGACCTCTGATGGGACACATGTCCAACAAAGTCTTGACACTGCCCGTGCAAATGAGAGAGAATTATGGAGAAGAGCACTTCATGATCTTGGGCTAACTTTGGTAGAAGGTTCTTTCGAAGATGGTGCAACATTAACCTATGCCAACGATGCTATTTGGCATATTGCAGGAGCGCAATGTTACACATGGGGAGGGACATTCCCCAAGACAGTACCCGAAAAATCCACCCCGTCTACAACAGGTGGTGTTTCAGCATCTGCATGGGTAACTGTTGGTGGTTTGAGTCTGCTCGATGAAGTAACAGAAATCAAAAACGAAGCAGTTGAGGCAAAAGACCAAGCAGAAGATGCGAGAGATGAGGCACAAGCATATGCATTGCAGGCCTCTGAGCTGGGAAACTTATACGCATCTGTTAGTGAAGGTCTTGCTGCAACTACGGATGGACAATATTTCCAAGTGCCTCAGGGAAGTGGTAGCTCTGTAGCGTTCAAAGTGTACAAGAATAATGCAGGGGTTGCTCAAGAAGTCGCGGCTGTTCCAGGAACAGGGGCCATTATAAATACCATCCGGGGATATGAATCGCTGGCGGTAGCCCAGAATGAGGTTGCGGCAGGTAATATCCCAAATGGGGCACATTGTTGGGTTAGAAATTCTTCAGACTCAACCCTAGCAAATGAGTATGTGAATAATTCAGGGGTTCTTAATCCGACAGATAGGTTGATAGCTCGTGACGACTACGCATACCAGATATCATCAAACAGTGTGGCCCTGGCGGGTTATGACCCGGAGACAAAAAGAGTGGCTCCTTTTTTAAACGCCGCTGGGCGGTTAATACAAATTGGTCCTGACGGAAAATATTATGAAGTGCTCACGCCGCAAGAGGCTGAGTTATATGCGCTCGGAACTGAGGGGGCAGTGCCGCAATTTATCGGCGGTGAAAAGGTGTGGCGCATGATCGTTGACGCCACGACAAACCAGATCGTTGAGGCTTACACGGTTGGCGGCCATCACTGGATCTACTCCGATAGCGGCTTGGTTCTTGTTAACCAGGAGAGTGGAGGGGGTGGCGGCGATGATATGACTATCCTCCCTGAGTATGGACTCCATTTGTCAGGGTCTACGGCTTACCCGTATTCAGAAGATGTTCCGGTATGCTTCATTTTTGTAACTGCCGGGCAGTCTAATGCACGCGGCTATTGCCCAGATGCGGATCAAACCATTATCGCGTCGACGCCAGTTTATCCTGATAACGCGTTTATGCTATCTGGCGGGGTCAGGAGAACGGGGGCACGCAGCACTACTCTGGTGCCACTGGTTGAGGCAGTAAGCGGCACTGATAAGGAGACTGCAGCATCTGGCTTGGCAAACACCTTCATTCGCGATATGGCTGCAGCTACCGGAATCATGCCGCGCACACTATCAATCGTGTGTGCCCAATCCGGGCAGGCATACGAGTACCAAAAACGCGGTAATGCCGTGTACCAATACATGCTGGATTCAATCGAAGACTGCGTGACGGCCTGTAAAGCGCGTGGCTGGCTGCCGATTGTTCTCTGCGTTGACTGGATGCAAGGAGAGTCAGACGAGGACTGGTCTGGGTTGCGGGAAGGGATGTATGAGTCTAGGATGAAGCAGTACCAGAGGCAAGTCATCAGTGACATCATGGCAAGGACTGGTCAAAACGAACCGCCGATCATCGCCATCACCCAGCTGGGGTATGTCAATGACGGGCATGGTGCGTTTACAGGCCAGCGTGTAAGGATGTCAGTAAACAACCTACATGGCCGTGAGCAGTTCCGTTGCGTAAATACCTTGTATCAGTACGATTTTATTACGGACGGTTTGCACCTCACCTGTGCTGCACAAAATAAACGTGGAGCGGCTGTGGCAAGAGCAATTATCCAGGAGTGGTTTACGAGCGGCTGGTATGGTATGGTTCCGAATGGTTTTGTATGGAACTCCCCCACGCAAATACAAATAAACATCCCTTCGTATACCAACCTGGTGATAGACACGACCAATATTAGTATTGATGGCCTGGCAAATTACGGTTTTAACTACACAGATGAATCGGCGTCACCCCCTGCCATTTCTAGCATAGCGATCAGCTCGGACGGAAAGGGCGTGCTGATTAACCTAGCATCTGCTCCTACTGGCCGTTTTGGACGGGTTTCCTATGCGACAGTAGAAAATCCTCTTCAAAGCGGTGCGACTGTCAAACCTTCTGGTAAGACCTTGGGCGCACGAGGGTGTGTAAGATCTTCTGCCGGAATCGCGTGGGTATACGATACATCTGTAACCCTCTACGACTGGTTACCGGCTTTTCGAATCAACGTTTTCTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
e8eb00180bafa1233aa5b9f7f376d6664e2c8fd8f4b2bd60627a30d1ee50dcd8
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7564
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
A collection of diverse bacteriophages for biocontrol of ESBL- and AmpC-beta-lactamase-producing E. coli Vitt,A.R., Sorensen,A.N., Bojer,M.S., Bortolaia,V., Sorensen,M.C.H. and Brondsted,L. 2023 — GenBank