Protein

View in Explore
Genbank accession
ADO99519.1 [GenBank]
Protein name
fiber
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,86
TSP
Evidence RBPdetect2
Probability 0,67
Protein sequence
MSLTRLKNIITSRTGRIIYVNPDDFDASDAIDNRGNSALRPFKSIQRAFLEVARFSYRVGLSNDEFDAFSIMLYPAEYIVDNRPGEVLYTNTAPIDANSNLDLTSPNNVLHKFNSVEGGIIVPRGCSLVGTDLRRTKVIPKYVPYPTIYAAKGINTEDQVPPRTSIFRVTGGTYFWQFSFFDGAEEGVYFKPDSTETLAPKFSHHRLTCFEFADGLNPLSKLISDGSVPNADYSAVPNILERTDLEIYYQKVSKAFATIPDTSGDPSTDQIQARVEENRIVGPISDEYRVLQITRNGQTATAVTVDEFDNPRDHGFSVGVNINVSGVTGSTGPQSELDASVYNGSFTVTSASGNVFTYQMQSEPTGNAVGSNITVKTEIDTVDSASPYAFNLSLRSVWGMNGMNANGSKATGFKSMVVAQFTGLSLQKDDRAFVRYNASTGNYDVATSGDGAHLDGFAEYRKGWGHRHIVCSNDSFIQAVSVFAVGYDTHFTAESGGDMSITNSNSNFGNTALRSAGFKAKSFSKDKAGAVTHIIPPKALSVISTTATGTSGASSITLANDGSINGIIQGMNVTGSGVGVGATVGSVNTNTRVVTLTATNTTAINGNVIFGEETSVNWVNIDIQRTKVINQSLAGSGGSPGSRLYLYGYTVEASPPTNKVQGFTVGARQDGTGANAVADKINCLLVANGAATATTQSATISPYGPSVSGLKAGVDGSPLQFDSATYTINGQAGSVGGWYLSVTADADPNSDTYNRIYNTLTTNNDYNNVNFTPTTFLKRIADGRNLQDRTYRIRLVIDKDKTNPLPRDPLSGYVMQPLNSDTTSYNLQNTFYIYDIEVVQEFERGIADGIYYITLLYASVAPSTSNFNNRKFSQNVNEVYPTFDRDNPVADPLAAVSVADNQTIGLVNATDGATPPAKDPKLSITKEAIVKMLTDTGWTQPGTTPGYESATARLSNVELTARAGDEEERKINIRNNNDGTVSPIPVEFRRHSILRSGNHTFEYLGFGPGNYSTAFPQTQVETLSADQIKFSQSIKEEAGVAFYSGLNSNGDLFIGNQVINPVTGQITNEDIAQLNVVGEENTTIETFSELVLTDKLTVIGGASNQLESIFAGPVTFQGQTTFTNNLSAKKISYFNQDGTVVKQTLLAPADANGQPSFANITGYTTPADGDLVYNINWTPGKSLGWIYYGGAWKEFGLTDTGQINIDTFNNNQHIGLGVAPTADYRVNVNGSARVDGDLIVTGRGGVGPDKYITKTYTGDGTTLTFAITTYTGVQHVDDSVLVFLNGVAQIAGTNYTVDSNGANVVFSSGDAPLASDTVHIVEMPI
Physico‐chemical
properties
protein length:1325 AA
molecular weight: 142079,41360 Da
isoelectric point:4,89244
aromaticity:0,09208
hydropathy:-0,26023

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
ADO99519.1
1 1325
Domain Start End Length (AA) Confidence
N-terminal 1 82 82 0,9467
Central domain 83 311 230 0,9609
C-terminal 312 1325 1013 0,1753
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-82
Central
83-311
C-terminal
312-1325

Taxonomy

  Name Taxonomy ID Lineage
Phage Synechococcus phage Syn19
[NCBI] 		445684 Uroviricota > Caudoviricetes > Pantevenvirales > Pontusvirus > Pontusvirus syn19
Host Synechococcus sp. WH 8109
[NCBI] 		166314 Bacteria > Cyanobacteria > Oscillatoriophycideae > Chroococcales > Synechococcus >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
ADO99519.1 [NCBI]
Genbank nucleotide accession
GU071106 [NCBI]
CDS location
range 27356 -> 31333
strand +
CDS
ATGTCCCTTACTAGACTTAAGAATATTATTACGTCCAGAACTGGACGTATCATCTATGTCAACCCTGACGACTTCGATGCCTCTGATGCTATTGACAACAGAGGTAACTCTGCACTGAGACCGTTTAAGTCTATCCAGAGAGCATTTCTTGAAGTTGCAAGATTCTCCTATCGAGTGGGTCTGTCGAACGACGAATTCGACGCCTTCTCGATTATGCTGTATCCAGCAGAATATATTGTAGATAATCGTCCTGGTGAGGTTCTGTATACTAATACAGCACCTATTGATGCAAACTCAAACCTTGACTTAACTTCTCCTAATAATGTTCTTCATAAGTTCAATTCTGTAGAAGGAGGGATCATTGTTCCCAGAGGTTGTTCGCTGGTTGGAACCGATCTTCGTCGTACCAAGGTTATTCCTAAGTACGTTCCTTATCCTACGATCTATGCTGCTAAGGGTATCAATACAGAAGATCAAGTACCTCCCCGCACCTCGATCTTCAGGGTTACTGGTGGAACATACTTCTGGCAGTTCTCCTTCTTCGATGGTGCTGAGGAAGGTGTATACTTCAAACCTGATAGCACAGAAACATTAGCACCTAAGTTTTCACATCACAGACTCACTTGCTTTGAGTTTGCTGATGGTCTTAATCCCCTTTCTAAGTTAATCTCTGACGGCAGTGTTCCTAACGCAGATTATTCTGCTGTGCCTAACATCTTAGAAAGAACTGACCTGGAGATTTATTATCAAAAGGTATCTAAAGCATTCGCTACAATTCCTGATACATCTGGTGATCCCTCAACTGACCAGATTCAGGCAAGGGTCGAAGAAAACCGTATTGTTGGTCCTATTTCCGATGAGTACAGAGTCCTTCAGATCACAAGAAATGGTCAGACAGCAACGGCGGTCACTGTTGACGAGTTTGATAACCCCAGGGACCATGGATTTTCCGTTGGTGTTAACATTAACGTTAGTGGAGTTACTGGATCTACTGGACCGCAATCCGAACTTGATGCATCAGTTTACAACGGATCTTTCACAGTCACATCCGCATCTGGTAACGTCTTTACTTACCAAATGCAATCTGAACCAACAGGTAACGCAGTCGGATCAAACATCACTGTAAAGACTGAGATTGATACTGTTGACTCTGCATCTCCATATGCGTTCAACCTGTCACTCCGCTCGGTGTGGGGTATGAATGGTATGAATGCTAATGGTAGCAAAGCAACTGGTTTCAAATCAATGGTTGTGGCGCAGTTCACTGGTCTGTCACTGCAAAAAGATGATAGAGCGTTCGTAAGATATAATGCCTCTACTGGTAACTATGATGTAGCAACATCTGGCGACGGTGCTCACTTAGATGGTTTTGCTGAGTATCGTAAAGGTTGGGGACACAGACACATTGTCTGCTCTAATGACTCATTCATTCAGGCAGTTTCGGTGTTCGCTGTTGGATATGACACACACTTCACTGCTGAGAGTGGCGGTGACATGTCAATTACAAACTCTAACAGTAACTTTGGTAATACCGCTCTTAGATCTGCTGGATTCAAAGCAAAATCATTCTCGAAAGATAAGGCAGGCGCAGTCACTCATATCATTCCACCCAAAGCATTATCGGTTATTTCTACAACTGCAACGGGTACTTCTGGTGCATCATCGATCACTCTCGCTAACGACGGTTCGATCAATGGTATCATCCAAGGCATGAATGTTACAGGATCTGGTGTTGGCGTTGGTGCCACCGTTGGTTCTGTGAATACAAACACTAGAGTCGTCACGTTAACTGCTACAAATACTACTGCAATTAACGGCAACGTTATCTTTGGTGAAGAAACATCAGTTAACTGGGTAAACATTGACATACAAAGAACAAAAGTCATCAACCAATCCCTTGCAGGATCTGGAGGATCCCCTGGATCTAGACTCTATCTCTACGGATATACTGTTGAGGCATCACCTCCAACAAATAAAGTCCAAGGTTTCACCGTTGGTGCTCGTCAGGACGGCACGGGCGCTAATGCTGTCGCGGACAAGATTAATTGCTTGCTTGTAGCAAATGGTGCAGCGACTGCTACAACACAATCTGCAACTATCTCACCATATGGACCTAGTGTTTCTGGTCTAAAAGCAGGTGTTGATGGTTCACCGCTTCAATTTGATAGTGCTACTTATACTATCAATGGTCAGGCAGGTAGTGTTGGTGGTTGGTATTTGTCTGTAACAGCAGATGCTGATCCTAATAGTGATACTTACAATAGAATTTACAATACACTTACTACAAACAACGATTATAATAACGTAAACTTCACTCCTACTACATTCCTGAAGCGTATTGCTGACGGTAGAAACCTTCAGGATAGAACGTATCGCATTCGTCTGGTTATTGATAAGGATAAGACTAATCCTCTGCCTCGTGATCCCCTCTCTGGTTATGTAATGCAACCATTGAATAGTGATACGACATCATACAATCTGCAAAATACTTTCTACATCTACGATATTGAAGTTGTACAAGAGTTCGAGCGAGGTATTGCCGATGGAATCTACTACATTACCCTCCTTTATGCATCTGTTGCTCCTAGCACAAGTAACTTCAACAACAGGAAGTTCTCTCAAAACGTCAACGAAGTCTATCCTACGTTTGACAGAGACAACCCTGTTGCTGACCCTCTTGCTGCTGTATCCGTCGCTGACAACCAAACTATCGGTCTAGTAAATGCTACCGATGGTGCTACACCACCTGCAAAAGATCCTAAGTTGTCTATCACTAAGGAAGCAATCGTTAAGATGCTGACTGATACTGGATGGACACAACCAGGTACAACTCCTGGATATGAATCTGCAACAGCGAGACTATCTAATGTTGAATTGACTGCTCGTGCAGGTGATGAAGAAGAGAGAAAGATTAACATCCGTAATAACAACGATGGAACTGTTTCTCCTATCCCCGTTGAGTTTAGACGCCACTCGATTCTGAGATCTGGTAACCATACATTTGAATATCTTGGTTTCGGTCCTGGTAACTACTCGACTGCATTCCCGCAGACTCAGGTAGAAACTCTGAGTGCTGATCAGATTAAGTTCTCTCAGTCAATTAAAGAAGAAGCAGGTGTTGCTTTCTACTCTGGTCTTAACTCTAACGGTGACCTGTTTATTGGTAACCAGGTTATCAACCCTGTTACAGGTCAAATCACAAACGAAGATATTGCACAACTGAATGTTGTTGGTGAAGAGAATACAACTATTGAGACATTCTCTGAGTTGGTTCTTACTGACAAACTCACGGTTATCGGTGGTGCATCTAACCAGTTAGAATCTATCTTCGCTGGTCCTGTTACATTCCAAGGACAAACTACCTTCACAAATAACCTTTCTGCTAAGAAGATTTCGTACTTCAACCAGGATGGCACGGTCGTCAAGCAAACCTTATTGGCACCAGCAGATGCAAATGGACAACCCTCTTTTGCTAATATCACGGGATACACTACGCCCGCTGATGGTGATCTTGTTTATAACATTAATTGGACACCAGGCAAGTCGCTTGGTTGGATATACTACGGTGGAGCATGGAAAGAATTTGGTCTCACAGATACTGGTCAGATTAATATTGATACTTTCAATAACAATCAACACATTGGTCTTGGTGTTGCTCCTACAGCTGATTATCGCGTAAATGTAAACGGTAGTGCAAGAGTTGATGGTGACTTGATTGTCACTGGTCGTGGCGGTGTTGGTCCCGACAAATATATTACTAAGACATATACAGGTGATGGAACAACCCTAACCTTTGCTATTACTACCTATACAGGTGTTCAGCACGTTGACGATTCTGTTCTGGTATTCCTGAACGGTGTTGCTCAAATTGCAGGAACAAATTATACTGTGGACTCTAATGGTGCAAACGTTGTATTCTCTTCTGGAGATGCACCTTTGGCATCGGATACAGTTCATATTGTCGAAATGCCTATCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
b38a20935318e52afb0fb6b4c0c9d5c071637e336a818fe1085aac3f4658fb47
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,3799
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Cyanophage Syn19 Henn,M.R., Sullivan,M.S., Osburne,M.S., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Erlich,R., Young,S.K., Koehrsen,M., Yandava,C., Zeng,Q., Alvarado,L., Anderson,S., Berlin,A., Borenstein,D., Chen,Z., Engels,R., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heiman,D., Hepburn,T., Howarth,C., Jen,D., Larson,L., Lewis,B., Mehta,T., Park,D., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., Walk,T., White,J., Yu,Q., Coleman,M.L., Huang,K.H., Weigele,P.R., DeFrancesco,A.S., Kern,S.E., Thompson,L.R., Fu,R., Hombeck,B., Chisholm,S.W., Haas,B., Nusbaum,C., Galagan,J. and Birren,B. 2011-09-23 — GenBank