Protein

View in Explore
Genbank accession
YP_010300249.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence RBPdetect
Probability 0,85
Protein sequence
MLSLPCTFDYWRNYKPLAPNLTVRVRNSGETEITLEKILQGARDEVTLHSPTEGVLDKVPAQRGWRLSAIKVNDPMVGTVRLNYFNDAFLYSPRSGYVGADCFSYILTNGTQQSDSGTITLDVYQWYTYQVLLYRLNTQKTYHRFTAKPFLKYASGQAPLKPVKFAQISWYYNQYRAETDSKGVTRIYKRRVVWQTTVADYTSYYNRQVYAPTIINTGEEVRAYTYFDDSLGAGFDGDYSHPFVPKNSQGDIELEIRLYTEEKTVWSPSLGRYILQVDLDQPLILDYRVSDIYGKQWWDSGNVLI
Physico‐chemical
properties
protein length:305 AA
molecular weight: 35320,30900 Da
isoelectric point:7,64083
aromaticity:0,14754
hydropathy:-0,45934

Domains

Domains [InterPro]
G3DSA:2.60.40.3440
STR
18–123
G3DSA:2.60.40.3440
G3DSA:2.60.40.3440
STR
18–125
G3DSA:2.60.40.3440
YP_010300249.1
1 305
Architecture
STR
STR 18-125 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010300249.1
1 305
Domain Start End Length (AA) Confidence
N-terminal 1 199 199 0,8486
Central domain 200 294 96 0,2771
C-terminal 295 305 10 0,3587
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-199
Central
200-294
C-terminal
295-305

Taxonomy

  Name Taxonomy ID Lineage
Phage Erwinia phage pEa_SNUABM_35
[NCBI] 		2869557 Uroviricota > Caudoviricetes > Alexandravirus >
Host Erwinia amylovora
[NCBI] 		552 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010300249.1 [NCBI]
Genbank nucleotide accession
NC_061442 [NCBI]
CDS location
range 109362 -> 110279
strand -
CDS
ATGCTCTCTTTGCCTTGTACGTTCGACTACTGGCGGAACTATAAGCCACTAGCTCCGAACCTTACGGTGCGAGTGCGTAACTCGGGTGAAACCGAGATAACACTCGAAAAGATCTTACAAGGCGCTCGTGATGAAGTGACGTTGCACAGCCCTACAGAGGGTGTACTCGATAAGGTGCCAGCTCAAAGGGGTTGGCGCCTTTCTGCTATTAAGGTCAATGACCCTATGGTTGGTACGGTGCGTCTGAACTATTTCAACGATGCGTTCCTCTATAGCCCACGCAGCGGTTACGTTGGTGCAGACTGTTTCTCTTACATCTTGACCAACGGTACGCAGCAATCAGACTCAGGTACGATTACCCTTGATGTTTATCAATGGTACACATATCAAGTCCTGTTGTATAGATTGAACACGCAGAAGACATACCACCGTTTCACTGCGAAGCCGTTCCTGAAATACGCATCAGGACAAGCGCCATTGAAGCCTGTAAAATTCGCACAGATAAGCTGGTACTACAACCAGTATCGTGCAGAGACAGACAGCAAAGGCGTGACTCGTATCTATAAGCGTCGTGTAGTCTGGCAGACAACTGTTGCCGACTACACCTCGTACTACAACCGTCAGGTATATGCGCCGACCATCATCAATACTGGTGAAGAAGTTCGAGCATACACATACTTCGACGACTCTCTTGGTGCGGGTTTCGATGGTGACTATTCACATCCGTTCGTACCAAAGAACTCACAAGGCGACATTGAGCTTGAGATTCGGCTTTACACTGAGGAGAAAACAGTGTGGAGTCCATCATTAGGCCGATACATTTTGCAAGTCGACCTGGACCAGCCTCTCATCCTTGATTACCGTGTGTCTGATATCTACGGTAAGCAGTGGTGGGATAGCGGTAACGTTTTGATATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
fd9b82c5f7e710a470ad0203b9702035c1e7d9e9668ddc46dd7bd34d46899f63
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,4957
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence of Erwinia phage pEa_SNUABM_35 Kim,S.G. and Park,S.C. 2021-01-07 — GenBank