Protein

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Genbank accession

WYA84198.1 [GenBank]

Protein name

tail protein

RBP type

TSP

Evidence DepoScope

Probability 1,00

TSP

Evidence RBPdetect2

Probability 0,78

Protein sequence

MFPIPVMMIMTSTGVVPLPAGIIKKVITLDYPDGSGNSKTSLALLLNDGRLFTQGDNVFGEIADGTRTAKYSTFHLASTTAADIFPADRCFVIKLQSGGWQYAGLLAGLVGSTAAGGADVCMTTWTSFPSSITSIITLANLKEVKGGYNNTLWLMNNGVLYGSGQNTVGSLGASNTNQIPNPRQITSVALAFDAGYNQCSYLNNVGSLRVCGASKGMAGNNSTTTAFVTATISSTETVFVKDYVNTVSQTLVIGDTSGGTGTTNYLYARSNTATTYTKVSNFSGGFSAWSFPMSRHAFFLSINNSLWAVGKNYTGNLGVGYASLATDPLVVEKPLKPEGVPSWDMSKLTSVHSQNLDVTNQLGYHATFFVYDGNLFYSGVTVDGKTNPLFNGTLNSNNFAPISQDSILGSELATSLTTDSLGICIVGGTKQLTYSINPPGAKIFNEAYTTSAPAYMTVSASGLMTFVAEGGFDAGMTALNAAGTTLSDSSGGYASTLEVYTPSLSAMDEGTTQTLVAEITPAGAENLPGMVVEYFSNDPTVATVDPVTGVITAVTDGDCRIGCRATYQGVVTVEDSSYLAVNAVAGKGVAPSPSSSLTVLNGYFNHSTDGAITFPNLSGTVTPANFVVKVDDVVVPTNKVIFRNKAFSTVDSYPAGEYRLAIDFASAAVVNSVEVSVEANPNLLELWGGNRISYSTSPASQFLKGCVNLRRITSDCFSNTSYTGTSVSGIFSGCTSLKAVPEGLFSDTLFPSITTMSSTFEGCTSLVSIPSDLFKNLSKVTRYSYTFKDCTALAEVPVGMFDDIPTKVTSFTAMFQGCLALTDFNKIFNDNPGLTVCGKRGALPSFFSGCTNLTGSGVTLTSTLGGAANSYLFRYCTKLSDYNNIPSGYK

Physico‐chemical properties

protein length:	890 AA
molecular weight:	93401,93600 Da
isoelectric point:	5,01140
aromaticity:	0,09888
hydropathy:	0,10416

Domains

Domains [InterPro]

DC_0065
STR
1–288

DC_0065 DC_0179 IPR008964 DC_0356 IPR032675

IPR009091
STR
23–354

IPR009091 DC_1711 DC_0669

IPR009091
STR
41–335

IPR009091 G3DSA:2.60.40.1080 DC_0669

IPR003343
STR
506–561

IPR003343

WYA84198.1

1 890

Architecture

STR

STR 1-889 |

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Domains [InterPro]

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
DC_0065	STR	DC_0065	1	288	Novel HMM	DC_0065	Central	Low	Positional only	140 proteins / 140 hits
IPR009091	STR	IPR009091	23	354	Merged direct domain	Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II	Central	Low	Positional only	141 proteins / 141 hits
IPR009091	STR	IPR009091	41	335	Merged direct domain	Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II	Central	Low	Positional only	141 proteins / 141 hits
DC_0179	STR	DC_0179	339	501	Novel HMM	DC_0179	Central	Low	Positional only	58 proteins / 58 hits
DC_1711	RBD	DC_1711	482	601	Novel HMM	DC_1711	C-terminal	Low	Positional only	141 proteins / 141 hits
G3DSA:2.60.40.1080	STR	G3DSA:2.60.40.1080	493	581	Merged direct domain	G3DSA:2.60.40.1080	Central	Low	Positional only	18 proteins / 18 hits
IPR008964	RBD	IPR008964	501	567	Merged direct domain	Invasin/intimin cell-adhesion fragments	C-terminal	Low	Positional only	2 proteins / 2 hits
IPR003343	STR	DC_0008	506	561	InterPro cluster	Bacterial Ig-like domain, group 2	C-terminal	Medium	Text match	304 proteins / 473 hits
DC_0356	STR	DC_0356	585	668	Novel HMM	DC_0356	Central	Low	Positional only	24 proteins / 24 hits
IPR032675	STR	IPR032675	669	883	Merged direct domain	Leucine-rich repeat domain superfamily	Central	Low	Positional only	55 proteins / 55 hits
DC_0669	RBD	DC_0669	683	837	Novel HMM	DC_0669	C-terminal	Low	Positional only	46 proteins / 46 hits
DC_0669	RBD	DC_0669	820	889	Novel HMM	DC_0669	C-terminal	Low	Positional only	46 proteins / 46 hits

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout

N-terminal

Central

C-terminal

WYA84198.1

1 890

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	23	23	0,8480
Central domain	24	222	200	0,4881
C-terminal	223	890	667	0,1104

Note: Constraints were applied during segmentation.
Fixed 19 C-terminal predictions appearing before Central domain

Legend: N-terminal Central domain C-terminal

3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring

N-terminal
1-23

Central
24-222

C-terminal
223-890

Taxonomy

	Name	Taxonomy ID	Lineage
Phage	Pseudomonas phage PsgM04F [NCBI]	3088886	Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host	Pseudomonas syringae pv. garcae [NCBI]	251653	Pseudomonadota > Gammaproteobacteria > Pseudomonadales > Pseudomonadaceae > Pseudomonas > Pseudomonas coronafaciens

Coding sequence (CDS)

Genbank protein accession

WYA84198.1 [NCBI]

Genbank nucleotide accession

OR584014 [NCBI]

CDS location

range 2079 -> 4751
strand +

CDS

ATGTTTCCAATTCCAGTAATGATGATTATGACCAGCACAGGTGTAGTTCCACTTCCAGCAGGGATAATCAAGAAAGTAATAACTTTAGATTACCCAGATGGTTCTGGCAACTCTAAAACCAGTTTAGCTCTCCTCTTGAACGATGGGCGTTTATTCACTCAAGGGGATAATGTGTTCGGAGAGATTGCTGACGGTACACGTACAGCAAAATACTCTACTTTCCATTTGGCATCAACAACAGCAGCAGATATATTTCCAGCAGATCGTTGCTTCGTTATTAAGCTTCAAAGTGGCGGTTGGCAGTATGCAGGATTGTTAGCAGGTCTTGTTGGATCTACAGCCGCTGGCGGCGCTGATGTTTGCATGACTACGTGGACCAGCTTCCCATCGTCTATTACCTCAATCATAACCTTAGCCAACCTGAAAGAGGTTAAAGGGGGTTATAATAATACCTTGTGGCTCATGAACAATGGAGTGCTTTATGGTTCAGGACAAAACACAGTGGGGAGCCTTGGTGCAAGTAATACTAACCAAATCCCAAATCCACGTCAAATAACTTCTGTTGCTTTAGCATTTGATGCAGGATACAACCAGTGTTCTTACCTTAACAACGTTGGTTCATTACGTGTTTGCGGTGCAAGCAAAGGTATGGCAGGTAACAACAGTACAACAACAGCTTTCGTTACTGCAACTATATCTTCTACCGAAACAGTTTTTGTGAAAGATTACGTTAACACGGTTTCCCAGACATTGGTAATTGGAGATACCTCTGGCGGTACTGGAACAACGAATTATTTGTATGCACGTTCTAATACTGCGACAACTTACACGAAAGTAAGCAACTTCTCCGGTGGTTTCTCTGCATGGAGTTTCCCAATGAGTCGCCACGCTTTCTTCTTAAGTATTAATAACAGTTTGTGGGCTGTAGGTAAAAACTACACAGGAAACTTAGGTGTTGGTTACGCATCTCTGGCAACAGATCCTTTGGTTGTTGAGAAGCCTCTTAAACCTGAAGGTGTTCCGAGTTGGGACATGAGCAAACTAACAAGTGTCCACAGTCAGAATCTGGATGTGACTAACCAGTTAGGCTACCATGCTACTTTCTTTGTCTACGATGGTAATCTGTTTTACTCTGGTGTTACTGTCGATGGTAAGACCAACCCTCTGTTTAATGGGACGTTGAATTCTAACAATTTCGCACCTATTTCACAAGATTCGATCTTAGGATCAGAGTTGGCTACCAGTTTAACTACAGATTCTTTAGGTATTTGTATTGTAGGTGGGACTAAACAGTTAACGTACTCAATAAATCCTCCAGGAGCCAAAATCTTCAACGAGGCTTACACAACATCTGCCCCAGCGTACATGACAGTATCTGCTTCTGGTTTGATGACGTTTGTGGCTGAAGGTGGTTTTGATGCGGGGATGACAGCATTGAATGCAGCAGGAACAACTTTATCAGATAGCTCTGGAGGTTATGCTTCAACGTTGGAAGTGTATACTCCAAGTCTTTCAGCTATGGATGAAGGGACAACGCAGACATTGGTGGCAGAAATAACTCCAGCAGGGGCGGAGAACCTCCCTGGCATGGTTGTTGAGTATTTCTCTAACGACCCTACGGTAGCAACAGTTGACCCCGTTACAGGCGTTATTACAGCGGTTACTGATGGGGATTGTCGTATTGGTTGTAGAGCAACCTATCAAGGCGTGGTAACTGTGGAAGATAGTTCTTATTTAGCGGTGAATGCTGTCGCGGGAAAGGGGGTAGCTCCATCTCCGAGTAGTAGTTTAACGGTTCTAAATGGATATTTCAACCACTCGACAGATGGGGCGATTACGTTCCCAAATTTATCGGGTACTGTCACACCAGCTAACTTTGTAGTTAAGGTGGATGACGTTGTAGTTCCTACAAATAAAGTGATATTTAGAAACAAAGCTTTTTCTACAGTGGATAGTTATCCAGCAGGAGAATATAGACTGGCTATTGACTTTGCAAGTGCTGCTGTAGTTAATAGTGTTGAAGTGTCTGTAGAAGCAAACCCAAATCTTTTAGAACTGTGGGGCGGTAACAGAATTAGTTATTCTACAAGCCCAGCTTCGCAATTCTTGAAAGGTTGTGTCAACTTAAGACGAATAACGTCAGATTGTTTTAGCAATACATCTTATACTGGAACATCTGTGAGCGGTATCTTCTCTGGTTGCACAAGTTTGAAAGCTGTTCCTGAAGGTTTGTTTAGTGACACTCTGTTCCCTTCGATAACAACAATGTCAAGTACGTTTGAAGGTTGCACATCTTTGGTGTCTATTCCTTCCGATTTGTTTAAGAATCTATCTAAAGTTACAAGATACTCTTACACTTTTAAAGATTGTACGGCTTTGGCAGAAGTTCCAGTAGGAATGTTTGATGATATTCCAACGAAAGTAACTTCTTTCACAGCTATGTTCCAAGGTTGTTTAGCACTTACAGATTTTAATAAAATCTTTAATGACAACCCAGGATTAACAGTTTGCGGTAAACGTGGAGCCTTACCTTCTTTCTTTAGTGGATGTACCAATCTGACTGGATCAGGTGTGACATTAACAAGCACGTTAGGAGGTGCAGCTAACAGTTACCTGTTTAGATACTGCACAAAACTTTCGGATTATAACAACATTCCTTCGGGTTATAAATAA

Genome Context

Tertiary structure

PDB ID

40dbd56c76710ae451b8a94a7711c5e815158318fa77bfb87447fc4055edbf90

ColabFold

Source ColabFold

Method ColabFold

Resolution 0,2796

Oligomeric State monomer

Download PDB

Model Confidence

Very high
pLDDT > 90

High
90 > pLDDT > 70

Low
70 > pLDDT > 50

Very low
pLDDT < 50

Protein

Domains

Domains [InterPro]

Domains [InterPro]

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

3D Structure with Domain Coloring

Domain Coloring

Taxonomy

Coding sequence (CDS)

Coding sequence (CDS)

Genome Context

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)

Model Confidence