Protein

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Genbank accession
QJD54630.1 [GenBank]
Protein name
non-contractile tail tubular protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,52
Protein sequence
MGLVSQSTKNLKGGISQQPNILRFSNQGEMQINGWSSETQGLQKRPPTTFLKRLAGVGFLGSAPLVHLINRDAQEQYYVAFSGGGMAVWDLKGNWYNVRNYNGYANCANPRTDLRIITIADYTFVVNRQRTVQMAGGLTWAGYPRLDGRALINVRGGQYGRTLSITINGDGSGGSPQASIKMPNGSAEKVPAGEPYAGMNQVDMTDAGWIANELAVQLQRNLGPSGWGFSAGTGWILITAPANDNVRQIATRDGYADTLLNGFIYQVQTFNKLPANAPGGYIVEITGESARSGDNYWVQYDASAKVWKETAKPKIIAGLEPSTMPHALIRAADGQFDWTPLTWDQRNAGDDDTNPMPSFVGDKINDVFFFRNRLGFLAGENVVMSRTSRYFNFFPSSVATLSDDDPIDVAISHNRISILKYAVPFSEQLLLWSDQAQFVLSSNGILSSKTIELDLTTEFDVSDGARPYGIGRGVYFAAPRASFTSLKRYYAIQDVSDVKSAEDVSAHVPSYLPNTAHAIHGSGTENFVSILSDGEPGNLYIYKFLYLNEQLQQQSFSHWNFGANSTILAAASIGSYMHLMIQRPEGICLERMEFTQHTIDYAIEPYRAYMDMKKQVTLGAYNIDTNQTELDLTSVYGGVPGADAVFYTLDQRGVVNQFEGPWNGASKLYFTGNRQGEQMIIGKQYVFQYEFSKFLIKQTADDGTSSTEDIGRLQLRRAWLNYEQSGEFEINVNNGSTEFVYVMSGGRLGQQIVLGELSLGTGQFKFPCTGNALNQRVTITSDSPNPLNVIGCGWEGNYIRRSSGI
Physico‐chemical
properties
protein length:805 AA
molecular weight: 88729,29720 Da
isoelectric point:5,49323
aromaticity:0,11180
hydropathy:-0,30708

Domains

Domains [InterPro]
IPR058003
TTP
1–805
IPR058003
QJD54630.1
1 805
Architecture
TTP
TTP 1-805
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QJD54630.1
1 805
Domain Start End Length (AA) Confidence
N-terminal 1 144 144 0,9908
Central domain 145 343 200 0,2930
C-terminal 344 805 461 0,1728
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-144
Central
145-343
C-terminal
344-805

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage MR1
[NCBI] 		2711169 Uroviricota > Caudoviricetes > Autographivirales > Studiervirinae > Hennigervirus
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QJD54630.1 [NCBI]
Genbank nucleotide accession
MT104465 [NCBI]
CDS location
range 23240 -> 25657
strand +
CDS
ATGGGTCTCGTTTCGCAATCCACAAAGAACCTCAAGGGAGGTATCTCGCAGCAACCGAACATCCTGCGTTTCTCCAACCAAGGGGAGATGCAAATCAACGGGTGGTCGTCGGAGACTCAAGGTCTTCAGAAGCGCCCACCTACTACGTTCCTCAAACGTCTCGCTGGCGTGGGGTTCCTCGGTTCCGCACCTCTGGTTCACCTAATCAACCGGGACGCGCAGGAGCAATACTACGTCGCCTTCTCGGGTGGTGGCATGGCCGTGTGGGACCTCAAAGGGAACTGGTACAACGTCAGGAACTACAACGGTTACGCCAACTGTGCCAATCCACGGACAGACCTGCGCATCATCACCATCGCTGACTATACGTTCGTTGTGAATCGCCAACGGACTGTACAGATGGCGGGTGGTCTCACATGGGCGGGCTATCCAAGGCTCGACGGGCGCGCTCTGATCAACGTCCGAGGCGGTCAGTATGGCCGGACACTCTCGATCACGATTAACGGTGACGGCTCTGGTGGCTCCCCTCAGGCGTCCATTAAGATGCCCAACGGGTCTGCCGAAAAGGTCCCTGCGGGTGAGCCCTATGCGGGCATGAACCAAGTGGACATGACGGACGCCGGGTGGATCGCTAATGAACTGGCGGTGCAACTACAAAGGAACCTTGGGCCATCCGGCTGGGGCTTCTCTGCGGGCACTGGCTGGATCTTGATCACTGCCCCGGCCAATGACAACGTTCGACAGATTGCGACCCGTGACGGCTACGCTGACACCCTTCTCAATGGGTTCATCTATCAGGTCCAGACGTTCAACAAATTGCCAGCCAACGCACCCGGTGGGTACATCGTTGAGATCACCGGTGAGAGTGCCCGCTCGGGTGACAACTACTGGGTCCAATACGACGCCTCTGCGAAGGTCTGGAAGGAGACAGCGAAGCCAAAGATCATTGCTGGCCTTGAACCCTCAACGATGCCTCACGCGCTTATCAGGGCCGCTGACGGGCAGTTCGACTGGACGCCTCTGACTTGGGATCAGCGCAACGCTGGTGATGACGACACGAACCCAATGCCATCCTTTGTGGGTGACAAGATCAACGACGTGTTCTTCTTCAGGAACCGTTTGGGTTTCCTCGCAGGCGAGAACGTGGTGATGTCGAGGACCTCTCGCTACTTCAACTTCTTCCCGTCCAGCGTTGCGACCCTGAGCGACGACGATCCGATTGACGTGGCTATCAGTCACAACCGCATCTCGATCCTGAAGTACGCCGTTCCGTTCTCCGAACAGTTGTTGCTCTGGTCTGATCAGGCTCAGTTCGTTCTGTCCTCGAATGGCATCCTGTCCTCGAAGACCATCGAGCTGGACCTGACTACAGAGTTCGACGTGAGCGATGGGGCCCGTCCCTATGGGATTGGTCGAGGCGTTTACTTCGCAGCCCCACGGGCGTCCTTCACGTCCCTTAAACGGTACTACGCGATTCAGGATGTCTCTGACGTGAAGTCTGCTGAGGACGTATCGGCACACGTTCCAAGCTACCTGCCCAACACCGCCCACGCGATCCATGGGTCTGGTACAGAGAACTTTGTGTCCATCCTCTCCGATGGCGAACCGGGCAACCTCTACATCTACAAGTTCCTGTACCTCAACGAGCAACTCCAGCAACAGTCGTTCTCTCACTGGAACTTCGGGGCCAACTCAACGATCCTCGCAGCGGCATCTATCGGGTCCTATATGCACCTGATGATCCAGCGCCCTGAGGGCATCTGTCTGGAACGCATGGAGTTCACCCAGCACACCATCGACTACGCCATTGAGCCTTACCGGGCCTATATGGACATGAAGAAGCAAGTCACCCTCGGTGCCTACAACATCGACACGAACCAGACGGAACTCGATCTGACCAGTGTTTATGGCGGCGTGCCGGGTGCTGACGCTGTGTTCTACACGCTGGATCAGCGGGGCGTGGTGAACCAGTTTGAAGGTCCATGGAATGGCGCATCGAAGCTCTACTTCACGGGCAACCGTCAGGGTGAGCAAATGATCATCGGCAAGCAATACGTCTTCCAATACGAGTTCTCGAAGTTCCTCATTAAGCAAACCGCTGATGATGGGACCAGTTCAACAGAGGACATCGGGAGGCTCCAGCTTCGTCGTGCATGGCTCAACTACGAACAGTCCGGTGAGTTCGAGATCAACGTCAACAACGGCTCCACTGAGTTCGTCTATGTGATGTCTGGTGGTCGCCTTGGGCAACAGATCGTCCTCGGTGAACTCTCGCTTGGGACCGGTCAGTTCAAGTTCCCTTGCACCGGCAACGCACTCAACCAACGAGTCACCATCACCAGCGATTCACCGAACCCACTCAACGTGATCGGATGCGGCTGGGAGGGTAACTACATCCGCCGATCTTCCGGCATCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
0215f5a048701ebc344c39ef58312db87775acd2ae387d1ed9feb03b9cbbdcb5
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2979
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Phage biocontrol to combat Pseudomonas syringae pathogens causing disease in cherry Rabiey,M., Roy,S.R., Holtappels,D., Franceschetti,L., Quilty,B.J., Creeth,R., Sundin,G.W., Wagemans,J., Lavigne,R. and Jackson,R.W. 2020 32383813 GenBank