Protein

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UniProt accession
J9PVK6 [UniProt]
Protein name
Pectin lyase domain containing protein
RBP type
TSP
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,88
TSP
Evidence RBPdetect2
Probability 0,93
Protein sequence
MYVPGDTYNVSKTIVVPRGVQLVFAPNAIIKPQNNINIFQMKPLASVEGATIDLKSFPSYDKACFYFNAADIFQFYEQSHVLKDINIMGVQKSSGWLGTGILMEANTPDSYIDNVKCNNITMTNIGKGIHLRVDPSITDNNHPSWVNANQFHQITIMNFDYGIYLEGHNSIPRDVGGNLFSQLQLQAEAGSKRMIYCESALNHFDGFFWDLHKMQVTNPAFEFTKTSKFNEVKSAMAQELTESWVDDGYLNSFPSPNNYVSDKRINAFPVSIPYTPNFLGNQDDWMVNGDKRGFTITQTSTHPIISGELTDLLSFDTEAGVTFNMSNVTYENPVVLEIDLSTDPCWYASFLTAVSPWGFQPKGYELDMFDIVSNKWMGGVHWTKNNKSQSHAVSAPWAGADKCTKVRIKFWGNNKVDDPKKPSPIPVATISRIMMTSTKDGGRAYMPYAATPTLPPPDITPILPADKTMVGDQDDILVQADKRYTVTSIGAAKTGGNIFGMFSLRKEQFCRWTNPTLAAPIIIEIDFGAKPIPYMESVGIAFGQGETPTNVKIERVTASGGSYVQLTNQAGLKTPSLHVASRAAQTYKLKFTIWGANNINTLVRVNRIFGTTGDGYPVAFVNTESDNTVYGDLSFGDTAKGIVLRSPDGSNWKMSIGNDGVQKWTKI
Physico‐chemical
properties
protein length:667 AA
molecular weight: 73851,76970 Da
isoelectric point:6,03576
aromaticity:0,10945
hydropathy:-0,26942

Domains

Domains [InterPro]
IPR012334
STR
1–169
IPR012334 DC_0399
IPR011050
STR
2–173
IPR011050
J9PVK6
1 667
Architecture
STR
RBD
STR 1-173 | RBD 187-254 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
J9PVK6
1 667
Domain Start End Length (AA) Confidence
N-terminal 1 11 11 0,2327
Central domain 12 365 355 0,9895
C-terminal 366 667 301 0,4261
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-11
Central
12-365
C-terminal
366-667

Taxonomy

  Name Taxonomy ID Lineage
Phage Bacillus phage B4
[NCBI] 		1141133 Uroviricota > Caudoviricetes > Herelleviridae > Bequatrovirus > Bequatrovirus B4
Host Bacillus cereus
[NCBI] 		1396 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Bacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AEZ66050.1 [NCBI]
Genbank nucleotide accession
JN790865 [NCBI]
CDS location
range 145465 -> 147468
strand -
CDS
ATGTATGTTCCGGGAGATACATATAACGTATCGAAAACAATTGTAGTACCAAGAGGTGTACAACTAGTCTTCGCACCAAACGCCATTATAAAACCTCAAAATAACATTAACATATTTCAAATGAAACCTTTAGCTTCTGTAGAAGGAGCTACAATCGATTTAAAATCTTTCCCTTCCTATGACAAAGCGTGTTTCTACTTCAACGCAGCAGATATATTCCAATTCTACGAACAAAGCCATGTGCTAAAAGATATTAATATCATGGGTGTCCAGAAGTCTTCCGGTTGGCTTGGTACAGGAATACTCATGGAAGCAAACACACCTGATTCATATATAGATAATGTTAAATGTAATAATATAACAATGACGAATATCGGTAAAGGTATTCACTTACGTGTAGACCCATCTATCACAGATAATAATCATCCTTCATGGGTGAACGCGAACCAGTTCCACCAAATAACAATTATGAACTTTGATTATGGTATCTATTTAGAAGGACATAACAGTATACCTCGTGATGTTGGTGGCAACTTATTTAGTCAATTACAACTACAAGCAGAAGCAGGTTCTAAGCGCATGATTTACTGTGAATCAGCATTGAATCATTTCGACGGATTCTTTTGGGATTTACATAAGATGCAAGTTACAAATCCTGCATTCGAATTTACAAAAACATCCAAGTTCAACGAAGTAAAATCAGCTATGGCTCAAGAGTTAACAGAGTCATGGGTAGATGACGGATACTTAAACTCATTCCCTAGTCCAAACAACTATGTATCAGATAAACGCATTAACGCATTCCCTGTCTCTATTCCGTACACTCCTAACTTCTTAGGGAATCAGGACGACTGGATGGTAAATGGAGATAAACGAGGATTCACTATCACACAAACATCTACGCATCCGATTATATCCGGGGAACTAACAGACCTACTATCATTCGACACAGAAGCCGGAGTTACATTTAATATGTCCAATGTAACATATGAAAACCCGGTTGTTTTAGAAATAGATTTATCCACAGACCCATGTTGGTATGCATCATTCCTTACAGCCGTTTCACCGTGGGGATTCCAACCAAAAGGATACGAGTTAGACATGTTTGATATCGTATCAAATAAATGGATGGGTGGCGTACACTGGACAAAGAACAACAAGTCACAGAGTCACGCCGTATCAGCACCGTGGGCTGGCGCAGATAAATGTACAAAGGTTAGAATTAAGTTCTGGGGTAATAATAAGGTAGATGACCCTAAGAAACCATCACCTATACCTGTAGCTACTATATCTAGAATCATGATGACAAGTACAAAAGATGGTGGACGCGCATATATGCCATACGCAGCTACACCTACGTTACCACCACCAGATATCACACCTATACTACCAGCAGATAAAACAATGGTAGGTGACCAAGACGATATCCTAGTACAAGCAGATAAACGTTACACAGTCACTTCAATAGGCGCAGCTAAGACAGGCGGAAACATCTTCGGTATGTTCTCTCTTCGTAAAGAGCAGTTCTGTAGATGGACAAACCCAACTCTAGCAGCACCAATCATTATAGAGATAGATTTTGGAGCTAAACCAATACCATACATGGAATCTGTAGGTATAGCGTTTGGTCAAGGCGAGACTCCTACCAATGTAAAGATAGAACGTGTAACGGCTAGTGGCGGCTCATACGTCCAGCTTACAAACCAAGCAGGATTAAAGACACCTTCACTACATGTAGCTTCCAGAGCTGCACAAACGTATAAACTTAAATTCACAATCTGGGGCGCTAACAATATAAACACACTTGTTCGTGTCAATCGTATCTTTGGTACAACTGGAGATGGGTACCCAGTCGCATTCGTTAATACAGAGAGTGATAACACTGTTTATGGCGACTTATCCTTCGGTGATACAGCAAAAGGTATTGTACTTCGTTCACCCGACGGTAGCAACTGGAAAATGAGCATAGGTAACGATGGCGTACAAAAATGGACAAAAATTTAG

Genome Context

Genome Context

Gene Ontology

Description Category Evidence (source)
GO:0044423 virion component Cellular Component IEA:UniProtKB-KW (UniProt)
GO:0016829 lyase activity Molecular Function IEA:UniProtKB-KW (UniProt)
GO:0051701 biological process involved in interaction with host Biological Process IEA:UniProtKB-ARBA (UniProt)
GO:0019058 viral life cycle Biological Process IEA:UniProtKB-ARBA (UniProt)

Tertiary structure

PDB ID
3ebe9480f56189d832466796dffe67e1cebe22aa4d7759d4d8038dfac1f30f6e
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7242
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50