Protein

View in Explore
Genbank accession
XOD41094.1 [GenBank]
Protein name
putative tail fiber protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect
Probability 0,78
Protein sequence
MAELKAGSTVGGNLIWNAGSLPFNPVAPNSIYYKTYKVFTTQEPPTAAEVDSVSASQGGTFQKEVTFKQGIKIAITVPGGNDANGIYAGNGDGNSYATANMDIKSWQGVGFFNASNVGSFPNQRSVVVDTREGTIRARGAVIGDKGVFDAGNRVYSPSNPPTAVQSNAIARIGDTISGTWNYTGASTLVFDRVTGGGIRFNDGSNIINGLQYQANGNLIAGGTNAPFAIHSSTNPAVNIGNQTGTMFNTLFPPNNVQVGLGAVLNFKQLKYDGDVARSSNFEFRNLKLAVDPTVDEDAVRLGFLNNRAMVRRQRITGEDWNALTNPGVYSVGVATNADLGLNAPPGVYPWGTLTVLLALDGAVTQVYTAHRGGAASTNPNASENTKEVMAYRVYISANSPWTDWKFIRSEAYNDNKYVKQIGDTMTGPLNLTGTNSWYLSEGKQLANISATNTYISNYANTLYLRGNGNQGLKYQTADNAIQTVYHTGNKPSKADVGLKHVVDQPSIQWLDLPTTQNQPGRYTKLATAPYTTSGDSYITMQIFGAGDYGQRQSPTDVVTLSARDMGASYQITDENSWQVLQITRSNGSGMMDNQASDGYYKYGVVFTATGIELWAKLPAFGRGSRISVLTSSTNAVFHGDPDAASNGFSVVTSMPTNWKQVRVGYNYTTMAKPSKADVGLSEVGNYEAVRKFPGDSMGELTMSMAIANNFRATGSANLVPLTGHTISVGRDSGLKRADFINNHNNGVSNETGGFVWWNGSGSTFDKLMYLDPTGRLYPDTITVRPKSIDSNLDSLVLTGVQHSPLVLERTNGNNISMIFKSASNVTYFGRRIDGQMGYNTGPSLDGPGGKLIIDDNNFQNQFFGGKTPNESVAPNALTGFKWAPNSAKYTWPTGIQMYSTSGPSGGNPGSRGYPGYVDKLPDDNNPVNDVLGTLLSFKLNDGRNLQFFNTSGRNDLWVRSMRASSTEEQNKDYKFTRVFTTDNPPVPSEVNAIAIGTELDFGTF
Physico‐chemical
properties
protein length:1004 AA
molecular weight: 108039,55520 Da
isoelectric point:7,10365
aromaticity:0,09960
hydropathy:-0,39641

Domains

Domains [InterPro]
DC_0505
ATT
1–389
DC_0505 DC_1159
IPR005601
STR
58–164
IPR005601 cd19958
XOD41094.1
1 1004
Architecture
ATT
STR
ATT 1-389 | STR 390-631 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XOD41094.1
1 1004
Domain Start End Length (AA) Confidence
N-terminal 1 63 63 0,9009
Central domain 64 280 218 0,3918
C-terminal 281 1004 723 0,7481
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-63
Central
64-280
C-terminal
281-1004

Taxonomy

  Name Taxonomy ID Lineage
Phage Serratia phage WSPA
[NCBI] 		3384840 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Serratia marcescens
[NCBI] 		615 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XOD41094.1 [NCBI]
Genbank nucleotide accession
PQ600363 [NCBI]
CDS location
range 125806 -> 128820
strand -
CDS
ATGGCAGAATTAAAAGCAGGTAGTACGGTTGGTGGCAACCTCATTTGGAACGCAGGATCTCTGCCGTTTAATCCGGTTGCTCCTAACAGCATTTACTACAAGACATATAAAGTTTTCACCACCCAAGAGCCACCAACGGCTGCTGAAGTCGATTCTGTATCTGCTTCTCAAGGTGGTACTTTCCAAAAAGAAGTAACCTTTAAGCAAGGTATTAAAATTGCAATTACTGTCCCTGGTGGCAATGATGCGAACGGGATCTATGCTGGTAATGGTGATGGCAACAGCTATGCTACAGCAAATATGGATATTAAGTCTTGGCAAGGTGTAGGTTTCTTTAACGCATCTAATGTTGGGTCTTTCCCAAACCAACGTTCAGTTGTTGTTGATACACGTGAAGGGACGATTCGTGCTCGCGGTGCAGTTATTGGTGATAAAGGTGTATTCGATGCTGGGAATCGTGTATATTCGCCTTCGAACCCTCCTACTGCTGTACAGTCTAATGCTATTGCTCGTATTGGCGATACAATTAGTGGAACATGGAACTATACCGGCGCAAGTACATTAGTATTTGATCGTGTAACTGGTGGAGGTATCCGTTTTAATGATGGCTCAAATATCATTAACGGTTTACAATACCAGGCTAATGGTAACTTGATTGCTGGCGGAACTAATGCTCCATTCGCTATCCATAGTTCAACTAACCCAGCAGTTAATATTGGTAACCAAACAGGCACGATGTTCAATACATTGTTCCCACCAAATAACGTACAAGTTGGTTTAGGCGCAGTCTTGAACTTCAAGCAGCTTAAGTACGATGGAGATGTTGCTCGTAGCTCTAACTTTGAATTCCGGAATCTTAAATTAGCTGTTGATCCAACTGTTGATGAAGATGCTGTTCGTTTAGGCTTTTTGAATAACAGAGCAATGGTTCGTAGACAACGCATTACAGGAGAAGACTGGAATGCATTAACGAACCCGGGCGTGTATAGCGTTGGTGTTGCTACTAACGCAGATTTGGGTCTTAATGCTCCACCAGGCGTTTATCCATGGGGTACTTTGACTGTATTACTGGCTTTGGATGGCGCAGTTACTCAAGTGTATACTGCTCATCGTGGTGGCGCTGCATCTACAAACCCAAATGCGTCAGAAAATACCAAAGAAGTCATGGCGTACCGTGTTTATATTTCAGCTAATTCACCTTGGACTGACTGGAAGTTTATTCGTTCTGAAGCCTATAATGATAACAAATATGTGAAACAAATCGGCGATACTATGACTGGTCCATTGAACTTAACTGGGACCAATTCATGGTATTTGTCTGAAGGTAAACAGTTAGCTAATATCTCCGCTACTAACACATATATCAGCAACTATGCTAATACACTTTATTTACGTGGTAATGGCAACCAAGGTCTAAAATATCAGACTGCAGATAATGCTATTCAAACTGTGTACCACACTGGTAATAAGCCTTCAAAAGCTGATGTTGGGTTAAAACATGTAGTTGACCAGCCAAGTATACAATGGTTAGATCTTCCAACAACCCAGAACCAACCTGGTCGTTATACTAAATTAGCAACGGCTCCTTATACCACTAGTGGTGATAGTTATATCACTATGCAGATATTTGGCGCTGGTGATTATGGACAACGTCAATCGCCAACAGATGTCGTCACTTTATCTGCTCGTGATATGGGTGCTTCTTATCAAATTACCGATGAGAACTCATGGCAGGTTCTTCAAATAACCCGATCTAATGGATCTGGTATGATGGATAACCAAGCCAGCGACGGTTATTACAAATACGGTGTAGTATTTACTGCTACTGGAATTGAATTGTGGGCTAAATTACCAGCATTTGGTCGTGGTTCTCGTATAAGTGTTTTGACTAGCTCGACTAATGCAGTTTTCCACGGTGATCCAGATGCCGCTAGTAATGGGTTCTCTGTTGTTACGTCGATGCCTACTAACTGGAAACAAGTTCGTGTTGGTTATAACTACACTACTATGGCTAAGCCTTCTAAGGCCGATGTAGGACTTTCTGAAGTAGGTAACTATGAAGCTGTTCGTAAATTCCCAGGTGATTCAATGGGTGAACTTACGATGTCAATGGCTATCGCCAACAACTTCCGTGCTACGGGTTCAGCTAACTTAGTTCCATTAACAGGACATACTATTTCTGTTGGCCGTGATTCTGGATTAAAACGCGCTGACTTCATTAATAACCATAACAATGGCGTATCTAATGAAACTGGCGGTTTTGTTTGGTGGAATGGCTCTGGATCTACATTTGATAAGTTAATGTATTTAGACCCAACCGGGCGTTTATACCCAGATACTATCACTGTCAGGCCGAAATCTATAGATTCTAACCTTGACTCGTTAGTGTTGACAGGTGTCCAGCATAGTCCACTAGTATTAGAACGTACTAACGGTAACAACATATCTATGATATTCAAGTCCGCATCTAATGTAACTTATTTCGGACGAAGAATTGATGGGCAAATGGGATATAACACGGGACCTTCTTTAGATGGCCCTGGTGGTAAATTGATTATCGATGATAATAATTTCCAGAACCAATTCTTTGGCGGTAAAACTCCAAATGAAAGTGTTGCTCCTAATGCTTTAACTGGATTCAAATGGGCCCCTAACTCGGCTAAATACACTTGGCCTACAGGCATCCAGATGTATAGTACTTCTGGCCCATCAGGTGGTAATCCTGGTAGCCGTGGATATCCTGGCTATGTTGATAAGTTACCAGACGATAATAACCCTGTTAATGATGTTTTAGGCACACTCTTATCGTTTAAATTGAACGATGGACGAAACCTTCAATTCTTTAACACTTCAGGTAGAAATGACCTATGGGTTAGATCGATGCGAGCTTCTTCTACAGAAGAACAAAACAAAGATTATAAGTTCACACGTGTCTTTACAACTGATAATCCACCTGTTCCTTCTGAAGTTAACGCTATTGCAATTGGTACAGAACTCGATTTTGGTACATTTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
bc4ee42a456d571295db75f9cf7e18762c65974381126c0890423b24983cf0a6
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2833
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50