Protein

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Genbank accession
BDI54415.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MPYIDITTMRGMMPRVVTSMLPEHSAVLAEDCHFRFGVITPERQISGVEKTFTIKPKTIFHYRDDFWFAWPDVVDVIRSPIAQDPHGRIYYTDGRFPKVTDATIATKGDGNHPTSSYRLGIPAPTTAPVCTVQQGGDVSDDNPNDDETRFYTETFVSDYGEEGPPGPASLEVTLRTPGTAVQLTLAPVPLQNANIKRRRIYRSASGGGEADFLLVAELDASVLSYTDKIPTKNLGPSLATWDYLPPPENMTGLCLMANGIAAGFAGNEVMFSEAYLPYAWPEVNRHTTAEDIVAICPLGTSLVVATKGEPYLFSGVSPSTISGSRIPSMQACLSRRSMVAMEGFVLYAGTNGLVSVDVNGNTALATEKIISPEQWQSQFNPMSIVAYSWRGDYIGCYTKPDGKQDVFVFSPANMDIRYLSTPFDCAWIDLAKDMMRVVTGDKMSVLAGGSLPSMIRWHSKIFSLPERTSFSCIRVKSPAPERVGITVMADDVPVIHFAPGTFKGSVVRLPAATGQNWQVMVSGFGQVERITLSTSMSEMPV
Physico‐chemical
properties
protein length:541 AA
molecular weight: 59097,74590 Da
isoelectric point:5,32339
aromaticity:0,09242
hydropathy:-0,09335

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
BDI54415.1
1 541
Domain Start End Length (AA) Confidence
N-terminal 1 492 492 0,7677
Central domain 493 530 39 0,0085
C-terminal 531 541 10 0,9927
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-492
Central
493-530
C-terminal
531-541

Taxonomy

  Name Taxonomy ID Lineage
Phage Stx2-converting phage F039
[NCBI] 		2944912 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
BDI54415.1 [NCBI]
Genbank nucleotide accession
LC710660 [NCBI]
CDS location
range 41389 -> 43014
strand +
CDS
ATGCCCTATATCGATATCACCACGATGCGTGGGATGATGCCGCGCGTTGTGACATCCATGCTGCCCGAGCATTCCGCTGTACTGGCGGAGGACTGCCATTTCCGGTTTGGTGTTATTACACCAGAACGTCAGATATCCGGGGTTGAGAAAACATTCACAATTAAGCCAAAAACAATTTTTCATTACCGTGACGATTTCTGGTTTGCATGGCCGGATGTGGTGGATGTGATCCGCAGTCCGATCGCTCAGGACCCCCACGGGCGTATTTACTACACTGACGGGCGTTTTCCTAAAGTGACGGATGCGACTATTGCCACAAAAGGGGACGGGAATCACCCGACATCATCGTATCGTCTGGGGATCCCCGCGCCGACGACAGCTCCTGTCTGTACTGTTCAGCAGGGCGGTGATGTTTCTGACGATAACCCGAATGATGACGAAACCCGGTTTTATACTGAAACCTTTGTCTCAGATTATGGTGAAGAAGGTCCGCCTGGTCCGGCGTCTCTGGAGGTAACACTCCGTACTCCGGGGACTGCGGTACAACTGACGCTGGCTCCGGTGCCATTGCAGAATGCCAATATTAAACGTCGCCGGATTTATCGCTCTGCATCAGGTGGAGGAGAAGCGGATTTTTTACTTGTGGCTGAACTGGATGCGTCAGTGCTCAGTTACACGGACAAAATACCGACGAAAAACCTTGGGCCTTCCCTGGCAACATGGGATTACCTGCCGCCACCGGAGAATATGACGGGTCTTTGCCTGATGGCTAATGGTATTGCTGCCGGGTTTGCCGGTAATGAAGTGATGTTTTCGGAAGCGTATCTGCCGTATGCATGGCCGGAAGTGAATCGTCACACGACGGCAGAAGATATTGTGGCTATCTGTCCGCTGGGAACGTCACTGGTGGTGGCGACAAAGGGGGAGCCTTATCTGTTCAGTGGTGTATCGCCTTCCACAATTTCTGGCTCCAGAATTCCTTCCATGCAGGCATGCCTGAGCCGAAGAAGCATGGTGGCGATGGAGGGATTCGTACTGTATGCCGGGACAAACGGTCTGGTATCTGTTGATGTAAACGGTAATACAGCACTGGCAACGGAAAAGATTATTTCACCAGAACAGTGGCAGAGTCAGTTTAACCCGATGTCCATTGTGGCTTATTCCTGGCGTGGTGACTATATCGGTTGTTACACAAAACCGGATGGTAAGCAGGATGTGTTTGTATTCAGTCCGGCGAACATGGATATCCGTTATCTCAGCACGCCGTTTGACTGTGCATGGATTGATCTTGCAAAAGATATGATGCGCGTGGTGACAGGGGACAAAATGTCAGTGCTTGCCGGGGGCTCTCTGCCGTCCATGATAAGGTGGCATTCAAAAATTTTTTCATTACCTGAAAGAACCTCTTTTTCCTGTATCAGAGTGAAATCTCCGGCACCTGAGCGGGTGGGGATCACTGTTATGGCTGATGATGTTCCTGTGATTCATTTTGCGCCGGGTACGTTTAAGGGAAGTGTGGTGAGACTTCCGGCAGCAACCGGGCAAAACTGGCAGGTGATGGTATCCGGATTCGGGCAGGTGGAACGAATAACCCTGAGTACATCGATGTCGGAGATGCCGGTATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
319a551f5a4e47881116575372872bbcb773e3cf37ab7e879f82d0e5775dbdda
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,9357
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Stx2-converting phage F039 Kimata,K. and Watahiki,M. 2024-03-06 — GenBank