Protein

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Genbank accession
XYH45557.1 [GenBank]
Protein name
tail protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,63
Protein sequence
MGLVSQSVKNLKGGISQQPDILRFSNQGALQVNGWSSETQGLQKRPPTTFTKRLQNKGFLGAKPLVHLINRDAQEQYYVGFSGTGLAVWDLKGNNYTVRGYNGYANCANPRTDLRLITVADYTFVVNRNVVCQMGSTLTNAGYPRLDGRALINVRGGQYGRTLSITINGDGTGSSPQASIKMPNGSAEKVPAGDPYAGMNQVDMTDASWIAGELARQLQVTLGPSGWSFQAGTGWILITAPANDNVRQIATKDGYADQLLSGFIYQVQTFTKLPANAPPGYLVEITGESARSGDNYWVQYDASGKVWKETAKPKIIAGFNNATLPHALVRAADGQFDWTPLTWDGRNAGDDDTNPMPSFIGSSINDVFFFRNRLGFLSGENVVMSRTSKYFNFFPSSVATLSDDDPIDVAISHNRISILKYAVPFSEQLLLWSDQAQFVLSSNGILSSKTIELDLTTEFDVSDGARPYGIGRGVYFAAPRASFTSLKRYYAIQDVSNVKSAEDVSAHVPSYIVNTVHAIHGSGTENFVSVLSDGAPNRVYIYKFLYLDEVLQQQSFSHWEFGGNTTVLAAACIGSYCYLMLDRPEGLCLERIEFTQHTIDFSIEPYRCYMDMKKVVTLGAYNPDTNLTSFDVRTAYGGTPDPDAVFFLIDQQGVLQEFSSTNWATNPYISFQGNRAGEQMVIGKQYQFQYEFSKFLIKQTADDGSTSTEDIGRLQLRRAWLNYEESGAFEINVNNGSSEFIYSMTGGRLGIAKTLGELSVGTGQFKFPVTGNAVNQRVTITSDNPNPLNVIGCGWEGNYIRRSSGI
Physico‐chemical
properties
protein length:806 AA
molecular weight: 88542,03990 Da
isoelectric point:5,58087
aromaticity:0,11290
hydropathy:-0,26824

Domains

Domains [InterPro]
IPR058003
TTP
1–806
IPR058003
XYH45557.1
1 806
Architecture
TTP
TTP 1-806
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XYH45557.1
1 806
Domain Start End Length (AA) Confidence
N-terminal 1 143 143 0,9910
Central domain 144 342 200 0,2601
C-terminal 343 806 463 0,1598
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-143
Central
144-342
C-terminal
343-806

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage Salado
[NCBI] 		3395525 Viruses >
Host Pseudomonas syringae pv. tomato str. DC3000
[NCBI] 		223283 Pseudomonadota > Gammaproteobacteria > Pseudomonadales > Pseudomonadaceae > Pseudomonas > Pseudomonas syringae group genomosp. 3

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XYH45557.1 [NCBI]
Genbank nucleotide accession
PV037723 [NCBI]
CDS location
range 37687 -> 40107
strand -
CDS
ATGGGACTCGTTTCGCAATCCGTCAAGAACCTCAAAGGAGGTATCTCGCAGCAACCGGACATCCTTCGGTTCAGCAACCAAGGCGCTCTGCAAGTCAATGGCTGGTCGTCCGAGACCCAAGGACTTCAGAAGCGTCCACCGACCACCTTCACCAAGCGTCTCCAGAACAAGGGGTTCCTCGGGGCCAAGCCTCTGGTTCACCTCATCAACCGGGATGCCCAAGAGCAATACTATGTGGGCTTCTCTGGGACTGGTCTTGCAGTCTGGGACTTGAAGGGCAACAACTACACCGTGCGTGGCTACAACGGTTACGCCAACTGCGCTAACCCTCGAACTGACCTGCGACTCATCACCGTGGCCGACTACACCTTCGTGGTCAACCGCAACGTCGTCTGCCAGATGGGATCGACCCTGACCAATGCGGGCTACCCAAGGCTGGACGGTCGAGCGCTCATCAACGTGCGTGGCGGTCAGTATGGCCGAACCCTGTCGATCACAATCAACGGTGATGGCACCGGGTCGAGTCCTCAAGCATCCATTAAGATGCCCAACGGTTCCGCCGAGAAGGTGCCTGCTGGTGACCCATACGCTGGCATGAACCAAGTCGATATGACTGACGCATCGTGGATCGCTGGTGAGCTTGCGCGGCAACTTCAGGTGACCCTTGGGCCTTCTGGGTGGTCGTTCCAAGCTGGCACCGGGTGGATTCTCATCACGGCACCGGCCAACGATAACGTCCGTCAGATCGCAACCAAGGACGGCTACGCTGACCAGTTGCTCAGTGGGTTCATCTATCAGGTTCAGACCTTCACGAAGCTCCCTGCGAACGCCCCACCGGGTTACCTCGTGGAGATCACTGGTGAGTCTGCCCGCTCGGGTGACAACTACTGGGTTCAATATGACGCCTCTGGGAAGGTCTGGAAGGAAACAGCGAAGCCCAAGATCATCGCAGGGTTCAACAACGCAACGCTCCCACACGCGCTCGTGAGGGCCGCTGACGGGCAGTTCGACTGGACACCTCTGACGTGGGATGGACGCAACGCTGGTGACGATGACACGAACCCAATGCCGTCCTTCATCGGTTCCTCGATCAACGACGTGTTCTTCTTCAGGAACCGTCTGGGCTTCCTCTCGGGCGAGAACGTTGTCATGTCGCGTACCTCGAAGTATTTCAACTTTTTCCCGAGCAGCGTGGCGACCCTGAGCGATGACGACCCGATTGACGTGGCTATCTCTCACAACCGTATCTCGATCCTGAAGTACGCTGTGCCTTTCTCCGAGCAGCTCCTGCTGTGGAGCGATCAGGCTCAGTTCGTTCTGTCGAGCAACGGCATCCTGTCGAGCAAGACCATCGAGCTGGACTTGACCACCGAGTTCGACGTGAGTGATGGAGCACGGCCCTACGGGATCGGTCGCGGGGTTTACTTCGCAGCACCTCGGGCATCCTTCACGAGCCTCAAGCGGTACTACGCGATTCAGGACGTGTCCAACGTGAAGTCCGCTGAGGATGTCTCTGCGCACGTTCCGAGCTACATCGTGAACACCGTCCATGCAATCCATGGGTCGGGTACTGAGAACTTCGTGAGCGTCCTCTCAGACGGTGCCCCTAACCGGGTCTACATCTACAAGTTCCTGTATCTCGATGAGGTGCTCCAGCAGCAGTCCTTCAGTCACTGGGAGTTCGGTGGCAACACCACTGTTCTTGCAGCGGCCTGCATTGGCTCCTACTGCTACCTGATGCTCGACCGTCCAGAGGGCCTGTGCCTTGAGCGTATCGAGTTCACCCAGCACACCATCGACTTCTCCATTGAGCCTTATCGCTGCTACATGGACATGAAGAAGGTCGTGACCCTCGGTGCGTATAACCCAGACACCAACCTGACGAGCTTCGACGTTCGGACGGCCTATGGTGGAACGCCTGACCCTGATGCGGTCTTCTTCTTGATCGACCAGCAGGGCGTCCTTCAGGAGTTCTCATCGACCAACTGGGCGACCAACCCGTACATCTCCTTCCAAGGCAACCGCGCTGGCGAGCAGATGGTCATCGGGAAGCAGTACCAGTTCCAATACGAGTTCTCCAAGTTCCTCATCAAGCAAACCGCTGACGATGGGTCTACCTCGACCGAGGACATTGGACGCTTGCAGCTTCGTCGAGCATGGCTGAACTACGAGGAATCTGGTGCCTTCGAGATCAACGTCAACAACGGCTCCAGCGAGTTCATCTACTCGATGACTGGCGGGCGTCTGGGCATCGCAAAGACCCTCGGAGAACTCTCTGTGGGCACCGGCCAGTTCAAATTCCCTGTGACGGGCAACGCGGTCAACCAACGAGTAACCATCACCAGTGACAACCCGAACCCACTCAACGTGATCGGCTGTGGCTGGGAAGGTAACTACATTCGCCGGTCTTCCGGTATCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
4f34c0846374acdb30bd3fb42464e08ff4ee99242046905d559bd772a54261e5
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,8628
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50